Table 5.
Comparison of identity between porcine iNKT cell TCR [nucleotide (nt)] and CD1D proteins [amino acid (aa)] and the corresponding TCR genes or proteins in human, mouse, and rat
| Human | Mouse | Rat | |
|---|---|---|---|
| pTRAV10 | TRAV10 | Trav11 | Trav14S1 |
| Accession # | NC_000014.9 | NC_000080.6 | AB041999.1 |
| nt identity | 282/333 (85%) | 228/309 (74%) | 214/290 (74%) |
| TRAJ18*01 | TRAJ18 | Traj18 | Traj18 |
| Accession # | NC_000014.9 | NC_000080.6 | DQ340291.1 |
| nt identity | 74/86 (86%) | 69/87 (79%) | 49/59 (83%) |
| pTRBV25 | TRBV25-1 | Trbv13-2 | Vβ8.2 |
| Accession # | NC_000007.14 | NC_000072.6 | X14973.1 |
| nt identity | 98/132 (74%) | 70/98 (71%) | 66/89 (74%) |
| CD1D | CD1D | Cd1d | CD1d1 |
| Accession # | BC027926.1 | NM_007640.2 | NP_058775.1 |
| aa identity | 213/313 (68%) | 200/345 (58%) | 199/345 (58%) |
Accession numbers and nucleotide identities, and amino acid identities were obtained from the NCBI database. Nucleotide and amino acid identities displayed as the number and percentage of overlapping nucleotides and amino acids, respectively.