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. Author manuscript; available in PMC: 2019 Dec 7.
Published in final edited form as: J Proteome Res. 2018 Oct 9;17(12):4267–4278. doi: 10.1021/acs.jproteome.8b00393

Table 2.

Top Popular Proteins for Common Disease Phenotypesa

rank  fibrosis  cell death inflammation metabolic syndrome oxidative stress protein misfolding
1 TGFB1 CASP3 IL6 ADIPOQ NFE2L2 PRNP
2 CTGF BCL2 TNF INS CAT HTT
3 ACTA1 BAX CRP SHBG SOD1 SNCA
4 SMAD3 CASP9 IL1B HSD11B1 HMOX1 TTR
5 SMAD2 CASP8 CXCL8 CRP SOD2 IAPP
6 PNPLA3 ANXA5 CCL2 SLC12A3 GSR TARDBP
7 KIF21A BCL2L1 IL10 RARRES2 KEAP1 CANX
8 SLC17A5 CYCS IL17A LEP GPX1 SOD1
9 GPT PARP1 TLR4 ETV3 TXN ATXN3
10 FN1 FASLG IL1A FABP4 NOX4 P4HB
11 TIMP1 TP53 ICAM1 APOB GCLC DNAJB2
12 SAMSN1 TNFSF10 VCAM1 NAMPT OGG1 HSF1
13 SMAD7 MCL1 NLRP3 CLCNKB PON1 ATXN1
14 IFNL3 BECN1 IL18 RETN NQO1 DNAJB1
15 COL1A1 FAS IL1RN PPARA GSTK1 RNF5
16 HPS1 XIAP HMGB1 PPARG PARK7 HSPA4
17 TM6SF2 AKT1 IL33 GPT CYBB CFTR
18 LGALS3 TNFRSF10B SELE RBP4 SOD3 HSPA5
19 HPS4 PDCD1 RNASE3 SAMSN1 PRDX5 ZFAND2A
20 POSTN CASP7 CCL5 APOA5 CASP3 HSPA8
a

Symbols for top-20 proteins represented by their gene name for each common disease process are shown and ranked by WCD and their P values.