Table 2.
Enriched GO terms in each co‐expressed gene cluster
| GO term | adjP(BH) | #G | Arabidopsis Homolog | |
|---|---|---|---|---|
| Cluster1 | Stem cell population maintenance | 1.90E‐06 | 6 | [AGL20, ANT, CLV3(SlCLE15/FAS), LHW, STM, WUS] |
| Reproductive structure development | 3.40E‐03 | 11 | [ACX4, AGL20, ANT, AP1, APX1, FES1, PIN1, SMT1, SPL15, STM, WUS] | |
| Oxidoreductase activity | 5.80E‐03 | 3 | [ALDH10A8, ALDH22A1, CER4] | |
| Response to reactive oxygen species | 7.40E‐03 | 4 | [APX1, CCS, CSD2, CYT1] | |
| Establishment of protein localization to organelle | 3.20E‐02 | 3 | [ACX4, AGL20, ATERDJ2A] | |
| Amine metabolic process | 3.60E‐02 | 3 | [ALDH10A8, GDU1, STM] | |
| Cytoskeleton organization | 4.30E‐02 | 3 | [EHD2, PLE, RPL3B] | |
| Cluster2 | Anatomical structure morphogenesis | 3.20E‐02 | 6 | [CLE41(SlCLE13), CLV3(SlCLE9), DFL1, GID1C, LOX1, UGT74E2] |
| Post‐embryonic organ development | 4.10E‐02 | 3 | [ARPN, GID1C, LOX1] | |
| Cellular response to lipid | 4.60E‐02 | 3 | [AREB3, GID1C, UGT74E2] | |
| Monocarboxylic acid metabolic process | 2.40E‐02 | 5 | [GAPC2, LACS4, LOX1, MOD1, UGT74E2] | |
| Cluster3 | NA | |||
| Cluster4 | Phenylpropanoid metabolic process | 8.70E‐03 | 3 | [ATR2, PAL2, UGT72E1] |
| Transferase activity, transferring acyl groups | 3.20E‐02 | 3 | [ACLA‐2, ASAT1, ICL] | |
| Tissue development | 2.70E‐02 | 4 | [ETC1, PIR121, YA] | |
| Cluster5 | Oxidoreductase activity | 2.40E‐03 | 5 | [ABA2, CAD9, DWF1, HPR, XDH1] |
| Response to karrikin | 4.00E‐04 | 5 | [ELF4, GI, PAL1, UGT78D2, ZIFL1] | |
| Phenylpropanoid metabolic process | 3.90E‐04 | 6 | [4CL3, APRR2, CAD9, DWF1, PAL1, UGT78D2] | |
| Pollen development | 1.00E‐02 | 5 | [4CL3, BT1, CAS1, PAL1, UTR3] | |
| Homeostatic process | 2.30E‐02 | 6 | [CAX3, CRY2, HA1, IAMT1, NHX2, WCRKC1] | |
| Response to oxidative stress | 2.10E‐04 | 9 | [BT1, CYT1, GI, HSFA2, LOL1, OXS3, PAL1, WCRKC1, XDH1] | |
| Response to water deprivation | 3.90E‐04 | 8 | [ABA2, CRY2, HA1, HPR, PAL1, SIP3, XDH1, ZIFL1] | |
| Regulation of reproductive process | 1.00E‐02 | 5 | [CAL, CRY2, ELF3, ELF4, GI] | |
| Response to light stimulus | 1.20E‐02 | 9 | [ASN1, CRY2, ELF3, ELF4, GI, HPR, HSFA2, JAC1, PAL1] | |
| Steroid biosynthetic process | 1.40E‐06 | 7 | [CYP51G1, DWF1, DWF5, FPS2, SMO1‐1, SMO2‐1, STE1] | |
| Cluster6 | Regionalization | 3.50E‐04 | 4 | [AN3, KAN, PHB, SCR] |
| Microtubule motor activity | 8.10E‐06 | 4 | [AT1G72250, ATK1, TES, ZWI] | |
| Cluster7 | Fruit development | 3.20E‐02 | 4 | [CRF2, DCP2, EFE, USPL1] |
| Single‐organism catabolic process | 3.20E‐02 | 4 | [CYSC1, GSTF8, PGI1, PLP4] | |
| Shoot system development | 1.50E‐02 | 6 | [CRF2, CT‐BMY, DCP2, FLA1, LBD37, PGI1] | |
| Response to cytokinin | 8.60E‐04 | 5 | [AHP1, APA1, CRF2, HAT22, ZFP6] | |
| Cluster8 | Response to inorganic substance | 4.30E‐04 | 14 | [AT4G39130, CCH, ECP63, EIN3, ERD10, GAD, HB‐7, LEA4‐5, LTP2, OASA1, OXS3, PDR12, RD26, SOX] |
| Response to acid chemical | 2.00E‐02 | 13 | [AFP1, AT4G39130, ECP63, ERD10, GPCR, HB‐7, LEA4‐5, LTP2, MYB48, PDR12, RD26, SCL14, TT4] |
p‐value was adjusted using the Benjaminin‐Hochberg (BH) correction.