Table 6. Results of snpzip analysis showing genes with SNPs that were the most informative for separating permethrin resistant and susceptible phenotypes.

Gene	SCa	No. SNPs
CPIJ005954	104	4
CPIJ005955	104	10
CPIJ005956	104	7
CPIJ005957b	104	5
CPIJ005959	104	7
CPIJ010544	278	27
CPIJ010546	278	5
	Total	65

All SNPs in the permethrin list were found in the malathion list, which itself had 19 unique SNPs.

^aSC, Supercontig number in Cx. quinquefasciatus genome.

^bIncluded in the SNPs for this gene are two SNPs in its upstream flanking sequence.