Table 1. Differentially expressed miRNAs under three different conditions.
| microRNA ID | Mean read counts | Day 0 vs. Day 3 cold | Day 0 vs. Day 3 room | Day 3 room vs. Day 3 cold | |||||
|---|---|---|---|---|---|---|---|---|---|
| Day 0 | Day 3 room | Day 3 cold | log 2 fold change | FDR–P value | log 2 fold change | FDR–P value | log 2 fold change | FDR–P value | |
| mir-339 | 2799 | 1406 | 914 | -1.92 | < E-40 | 0.55 | 0.002 | -1.15 | 5.62E-09 |
| mir-1307 | 3983 | 2096 | 1469 | -1.68 | < E-40 | 0.53 | 0.048 | -1.05 | 3.40E-07 |
| mir-20a | 25311 | 30901 | 73074 | 1.26 | 3.82E-38 | -0.76 | 7.94E-07 | 0.69 | 1.98E-11 |
| mir-16-2 | 11264 | 13261 | 31563 | 1.24 | 5.77E-30 | -0.63 | 3.89E-05 | 0.69 | 1.95E-09 |
| mir-16-1 | 11939 | 13889 | 33378 | 1.24 | 2.09E-29 | 0.56 | 0.0001 | 0.71 | 1.35E-09 |
| let-7f-2 | 10579 | 10583 | 29367 | 1.23 | 1.35E-25 | 0.31 | 0.22 | 0.92 | 2.42E-13 |
| let-7f-1 | 9673 | 9651 | 26766 | 1.22 | 6.05E-25 | 0.31 | 0.22 | 0.91 | 2.77E-13 |
| mir-18a | 9995 | 9929 | 21775 | 0.86 | 2.25E-22 | 0.28 | 0.06 | 0.57 | 9.27E-10 |
| mir-23a | 45 | 24 | 16 | -1.76 | 3.01E-20 | -0.59 | 0.07 | -1.17 | 4.96E-08 |
| let-7g | 15077 | 13976 | 32563 | 0.86 | 1.65E-19 | 0.21 | 0.46 | 0.65 | 7.32E-11 |
| mir-374b | 4089 | 3949 | 9104 | 0.92 | 3.99E-19 | 0.29 | 0.16 | 0.63 | 6.73E-09 |
| mir-15a | 10374 | 10342 | 26408 | 1.09 | 3.33E-17 | 0.33 | 0.23 | 0.76 | 2.67E-08 |
| mir-139 | 1687 | 1950 | 5001 | 1.36 | 2.06E-16 | 0.45 | 0.18 | 0.91 | 1.59E-07 |
| mir-126 | 40204 | 39748 | 95026 | 0.97 | 2.58E-16 | 0.30 | 0.24 | 0.67 | 8.21E-08 |
| let-7a-1 | 6934 | 5954 | 14651 | 0.81 | 9.46E-16 | 0.10 | > 0.99 | 0.72 | 1.52E-11 |
| let-7a-2 | 6960 | 5980 | 14670 | 0.81 | 9.50E-16 | 0.10 | > 0.99 | 0.71 | 1.52E-11 |
| let-7a-3 | 6853 | 5893 | 14481 | 0.81 | 1.35E-15 | 0.10 | > 0.99 | 0.72 | 1.62E-11 |
| mir-181c | 579 | 357 | 300 | -1.17 | 1.54E-14 | -0.30 | 0.58 | -0.86 | 7.31E-08 |
| mir-30b | 13610 | 12185 | 29500 | 0.86 | 4.67E-13 | 0.11 | > 0.99 | 0.74 | 1.43E-09 |
| mir-671 | 100 | 73 | 36 | -1.75 | 9.21E-13 | -0.21 | > 0.99 | -1.54 | 1.74E-09 |
The table shows the top 20 miRNAs that are differentially expressed under three different conditions (Day 0; baseline, Day 3 room; 22°C storage with agitation for 72 h, Day 3 cold; 4°C storage without agitation for 72 h). Mean read counts are expressed as non-normalized read counts.