Table 2. Primary information for ICOS rs4404254 T>C, rs10932029 T>C, CD28 rs3116496 T>C and CD80 rs7628626 C>A SNPs.
Genotyped SNPs | Chromosome | Chr. Pos. (NCBI Build 38) | Region | MAF1 for Chinese in database | MAF in our controls (n=923) | P-value for HWE2 test in our controls | Genotyping method | Genotyping value (%) |
---|---|---|---|---|---|---|---|---|
ICOS rs10932029 T>C | 2 | 203937045 | Intron | 0.08 | 0.09 | 0.962 | SNPscan | 99.27 |
ICOS rs4404254 T>C | 2 | 203960563 | 3′UTR | 0.13 | 0.17 | 0.442 | SNPscan | 99.27 |
CD28 rs3116496 T>C | 2 | 203729789 | Intron | 0.10 | 0.10 | 0.821 | SNPscan | 99.27 |
CD80 rs7628626 C>A | 3 | 119525574 | 3′UTR | 0.12 | 0.12 | 0.948 | SNPscan | 99.27 |
MAF, minor allele frequency.
HWE, Hardy–Weinberg equilibrium.