Table 3.
Statistics of Hi-C sequencing and mapping.
| Statistics of mapping | ||
|---|---|---|
| Read1 | Read2 | |
| Total Reads | 10,000,000 | 10,000,000 |
| Unique Alignments | 7,869,514 | 7,702,126 |
| Multiple Alignments | 859,867 | 832,203 |
| Failed To Align | 866,895 | 1,073,869 |
| Unique Mapped Paired-end Reads | 6,056,459 | 6,056,459 |
| Statistics of valid reads | ||
| Unique Mapped Paired-end Reads | 6,056,459 | |
| Invalid Paired-end Pairs | 1,699,845 | |
| Valid Paired-end Reads | 4,356,614 | |
| Valid Rate (%) | 43.56 | |
| Cis-close (<10 Kbp) | 478,994 | |
| Cis-far (>10 Kbp) | 2,313,017 | |
| Trans | 1,564,603 | |
Cis-close (<10 Kbp): interactions between intrachromosomal read pairs less than 10 kb apart.
Cis-far (>10 Kbp): interactions between intrachromosomal read pairs more than 10 kb apart.
Trans: the alignable read pairs represent interchromosomal interactions.