Table 3.
The identified SNPs reached the threshold (P < 5.00 × 10−7) for SGE of growth traits in Large White pigs.
| Trait | Chr | Range of SNP (Mb) | Number of SNP | Position (bp) | n_miss | Allele | MAF | Candidate gene | P-value |
|---|---|---|---|---|---|---|---|---|---|
| sgeADG | 14 | 98.69–98.73 | 1 | 98711408 | 0 | A/G | 0.188 | PRKG1 | 3.80E-07 |
| sgeD100 | 2 | 14.29–14.33 | 1 | 14306048 | 0 | G/A | 0.450 | LOC110259270 | 1.38E-07 |
| sgeD100 | 3 | 15.37–15.41 | 2 | 15390061 | 2 | G/A | 0.276 | 2.38E-07 | |
| sgeD100 | 4 | 15.39–15.43 | 2 | 15405575 | 0 | C/T | 0.450 | 5.35E-08 | |
| sgeD100 | 7 | 124.84–124.88 | 4 | 124864925 | 0 | T/C | 0.250 | 1.03E-08 | |
| sgeD100 | 8 | 112.41–112.45 | 1 | 112431517 | 2 | A/G | 0.263 | GAR1/CFI | 3.41E-07 |
| sgeD100 | 9 | 14.94–14.98 | 1 | 14961639 | 0 | A/G | 0.138 | 4.21E-07 | |
| sgeD100 | 16 | 23.17–23.21 | 1 | 23192567 | 0 | A/G | 0.100 | 4.93E-07 | |
| sgeD100 | 16 | 23.19–23.23 | 5 | 23209532 | 0 | G/A | 0.100 | 4.93E-07 | |
| sgeD100 | 17 | 9.68–9.72 | 1 | 9697454 | 2 | G/A | 0.434 | 2.96E-07 | |
| sgeADFI | 8 | 88.65–88.69 | 1 | 88672493 | 0 | A/G | 0.100 | SLC7A11 | 2.42E-07 |
| sgeADFI | 14 | 116.10–116.14 | 1 | 116122434 | 0 | G/C | 0.250 | SORCS3 | 3.80E-07 |
| sgeFCR | 1 | 57.25–57.29 | 2 | 57267261 | 0 | G/C | 0.125 | GABRR2 | 2.83E-07 |
| sgeFCR | 6 | 29.60–29.64 | 1 | 29619511 | 0 | A/C | 0.212 | 2.38E-07 | |
| sgeFCR | 6 | 153.48–153.52 | 1 | 153495956 | 0 | T/C | 0.287 | 4.75E-07 | |
| sgeRFI | 1 | 312.93–312.97 | 2 | 312947811 | 0 | G/A | 0.350 | 1.18E-08 | |
| sgeRFI | 1 | 251.97–252.01 | 1 | 251994772 | 0 | T/G | 0.200 | LPAR1 | 3.99E-07 |
| sgeRFI | 16 | 43.79–43.83 | 5 | 43805766 | 0 | C/T | 0.212 | ADAMTS6 | 3.72E-09 |
Chr, Chromosome; Range, Range of significant chromosome region; Number of SNP, Number of SNP involved; Position, Position of top SNP; n_miss, number of missing values of the SNP; Alleles, Alleles of top SNP; MAF, Minor allele frequency; Candidate Gene, Gene found in the range.