Skip to main content
. 2019 Jun 28;10:590. doi: 10.3389/fgene.2019.00590

Table 5.

Genomic regions and corresponding lead SNPs identified by single- and multi-locus GWAS for the Ca/P ratio.

Lead SNP SSC1 SNP position 95% confidence interval (Mb)2 –log10 (P-value) Bayes factor MAF3 % Var4
ASGA0000047 1 477400     0.477 ± 0.002 3.88 10.59 0.424 3.2
M1GA0001253 1 180934106 180.936 ± 0.005 4.39   2.66 0.477 3.7
ALGA0030823 5 15372183   15.372 ± 0.001 4.45 11.77 0.320 3.7
ALGA0118376 8 18998044   18.999 ± 0.000 5.68   1.84 0.054 4.9
ASGA0041852 9 14569966   14.570 ± 0.000 4.50   1.37 0.277 3.8
ASGA0056810 13 25360591   25.361 ± 0.001 3.54 22.43 0.490 2.9
MARC0060323 14 33722981   33.724 ± 0.000 4.57   5.00 0.398 3.8
INRA0045347 14 84495128   84.496 ± 0.002 5.26   8.31 0.314 4.5
INRA0045383 14 86273463   86.898 ± 0.003 4.65   5.24 0.255 3.9
ALGA0113690 15 26316801   26.316 ± 0.002 5.05   7.25 0.281 4.3
MARC0009678 17 44751346   44.753 ± 0.002 4.59   4.43 0.163 3.8

1Sus scrofa chromosome; 2Calculated according to Li’s method (Li, 2011); 3Minor allele frequency; 4Explained proportion of the phenotypic variance by the lead SNP.