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. 2019 Jul 3;9:9601. doi: 10.1038/s41598-019-45898-2

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Hormone biosynthesis pathways. Some GA deactivation and signaling genes discussed are also included. Up- and down-regulated genes are shown with up and down arrows. Black, red and blue arrows represent differential expression at 12, 24, and 36 HAI, respectively. Genes without arrows are expressed in at least one condition, although not classified as differentially expressed by our statistical thresholds. Genes are numbered as follows: 1) nine-cis-epoxycarotenoid dioxygenase 3 (NCED3); 2) SUR2; 3) tryptophan aminotransferase related 2 (TAR2); 4) DWARF4 (DWF4); 5) DWARF3 (DWF3); 6) brassinosteroid-6-oxidase 2 (BR6ox2); 7) 1-amino-cyclopropane-1-carboxylate synthase (ACS); 8) ent-copalyl diphosphate synthase (CPS); 9) ent-kaurene synthase (KS); 10) ent-kaurene oxidase (KO); 11) ent-kaurenoic acid oxidase (KAO); 12) GA 20-oxidase (GA20ox); 13) GA 2-oxidase (GA2ox); 14) GA 3-oxidase (GA3ox); 15) GIBBERELLIN INSENSITIVE DWARF1 (GID1) [Glyma.02G151100 (GID1b1), Glyma.10G022900 (GID1b2), Glyma.03G148300 (GID1b3), Glyma.10G158000 (GID1c1), and Glyma.20G230600 (GID1c2); 16) DELLA. Abbreviations: Abscisic Acid (ABA); indole-3-pyruvic acid (IPyA); Indol-3-acetaldoxime (IAOx); Indol-3-acetaldoxime N-oxide (IA Ox N-oxide); indole glucosinolates (IG); Indole-3-acetic acid (IAA); Brassinosteroid (BR); 1-aminocyclopropane-1-carboxylic acid (ACC); geranyl geranyl diphosphate (GGDP); ent-copalyl diphosphate (ent-CDP).