Table 1.
Summary of the RNA-seq results
| Infection | Sample | Replicate | Raw reads | Clean reads | Mapped reads | Mapping rate |
|---|---|---|---|---|---|---|
| local | EV | 1 | 56,095,920 | 49,607,102 | 48,784,974 | 98.34% |
| local | EV | 2 | 40,783,494 | 35,461,778 | 34,878,028 | 98.35% |
| local | EV | 3 | 59,215,650 | 50,797,194 | 49,957,654 | 98.35% |
| local | TLCV | 1 | 46,414,226 | 42,273,896 | 38,070,811 | 90.06% |
| local | TYLCV | 2 | 40,583,678 | 34,799,420 | 31,263,478 | 89.84% |
| local | TYLCV | 3 | 42,441,872 | 36,642,412 | 32,897,690 | 89.78% |
| systemic | EV | 1 | 45,831,882 | 42,069,696 | 41,242,974 | 98.03% |
| systemic | EV | 2 | 40,432,870 | 36,748,216 | 35,955,596 | 97.84% |
| systemic | EV | 3 | 48,885,308 | 45,262,860 | 44,405,978 | 98.11% |
| systemic | TYLCV | 1 | 47,349,296 | 43,508,220 | 42,484,166 | 97.65% |
| systemic | TYLCV | 2 | 55,797,434 | 51,761,828 | 50,618,532 | 97.79% |
| systemic | TYLCV | 3 | 49,035,824 | 45,797,334 | 44,821,767 | 97.87% |