Table 3.

GO enrichment of DEGs common to systemic infections by TYLCV and TbSCV in N. benthamiana. Over-represented GO categories (Biological Process Ontology) in the different subsets of DEGs represented in Fig. 6

GO.ID	Term	Annotated	Significant	Expected	p value
Y35A_up+up
GO:0006108	malate metabolic process	36	3	0.13	0.00027
GO:0046470	phosphatidylcholine metabolic process	19	2	0.07	0.00197
GO:0000272	polysaccharide catabolic process	25	2	0.09	0.00341
GO:0016998	cell wall macromolecule catabolic process	29	2	0.1	0.00457
GO:0006032	chitin catabolic process	31	2	0.11	0.00521
GO:0045454	cell redox homeostasis	229	4	0.8	0.00835
GO:0050832	defense response to fungus	4	1	0.01	0.01386
GO:0042742	defense response to bacterium	4	1	0.01	0.01386
GO:0046373	L-arabinose metabolic process	5	1	0.02	0.0173
GO:1902358	sulfate transmembrane transport	7	1	0.02	0.02413
GO:0019953	sexual reproduction	11	1	0.04	0.03767
Y35A_down+down
GO:0016114	terpenoid biosynthetic process	30	2	0.02	0.00028
GO:0009813	flavonoid biosynthetic process	6	1	0	0.00498
GO:0006012	galactose metabolic process	23	1	0.02	0.01897
Y35AB_up+up
GO:0006355	regulation of transcription, DNA-templated	1764	27	11.74	0.000032
GO:0006529	asparagine biosynthetic process	11	2	0.07	0.0023
GO:0006952	defense response	112	4	0.75	0.0067
GO:0046470	phosphatidylcholine metabolic process	19	2	0.13	0.007
GO:0006571	tyrosine biosynthetic process	3	1	0.02	0.0198
GO:0005992	trehalose biosynthetic process	34	2	0.23	0.0215
GO:0005975	carbohydrate metabolic process	1345	19	8.95	0.0215
GO:0006979	response to oxidative stress	257	5	1.71	0.0288
GO:0006421	asparaginyl-tRNA aminoacylation	5	1	0.03	0.0328
GO:0046373	L-arabinose metabolic process	5	1	0.03	0.0328
GO:0009607	response to biotic stimulus	43	2	0.29	0.0332
Y35AB_down+down
GO:0016114	terpenoid biosynthetic process	30	2	0.03	0.00032
GO:0009813	flavonoid biosynthetic process	6	1	0.01	0.00529