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. 2019 Jul 5;10:2990. doi: 10.1038/s41467-019-10841-6

Fig. 2.

Fig. 2

Survival probability S(t) for various stochastic processes. In all graphs, symbols are the results of stochastic simulations (detailed in SI), continuous lines give the theoretical predictions (Eq. (18)), and dashed line represent the predictions of the pseudo-Markovian approximation (The pseudo-Markovian approximation, which is similar to the Wilemski–Fixman approximation for the polymer cyclization kinetics problem, consists in using effective propagators in Eq. (18), i.e p(x,tx0)=e-(x-x0)22ψ(t)(2πψ(t))d2.). a S(t) for a random walk on the Sierpinski gasket for two values of the initial (chemical) source-target distance. Here, df=ln3ln2, dw=ln5ln2, and K0.3031. Simulations are shown for a fractal of generation 11. Continuous lines are the predictions of Eq. (9). b S(t) for a one-dimensional “bidiffusive” Gaussian process of MSD ψ(t)=t+30(1-e-t). c S(t) for a one-dimensional Rouse chain with N=20 monomers, for various source-to-target distance r0 (indicated in the legend in units of the monomer length). d S(t) for the same system with N=15 and r0=3, comparing stationary initial conditions (the other monomers being initially at equilibrium) or non-stationary ones (for which all monomers start at the same position r0). e S(t) for a one-dimensional FBM of MSD ψ(t)=t2H with Hurst exponent H=0.34. f Two-dimensional FBM of MSD ψ(t)=t2H in each spatial direction with H=0.35. The target is a disk of radius a=1 and r0 is the distance to the target center. For (b), (c), (d), (e), and (f), the continuous lines represent our predictions (Eq. (18)), in which T¯ is calculated by using the theories of refs. 12,25,48; in (b) and (c) the only hypothesis to predict T¯ is that the distribution of supplementary degrees of freedoms at the FPT is Gaussian, in (e) and (f) we use the additional “stationary covariance” approximation. In (d), for non-stationary initial conditions, T¯ is measured in simulations in confined space. A table that compares the values of S0 in the theory and in the simulations is given in SI