Table 1.
CCR5 variants found in the survey, position and frequencies (Caprine Reference Sequence HQ650162.1)
Variation | Region of interest | Frequency % (MAF) |
---|---|---|
g.186_188InsTC | Promoter | 0.17 |
g.226 G > A | Promoter | 0.17 |
g.551 C > G | Promoter | 0.14 |
g.925 C > A | Promoter | 0.17 |
g.1059 C > T | Promoter | 0.19 |
g.1394 C > T | Promoter | 0.17 |
g.2170 T > C | Intron | 0.17 |
g.2573 A > C | Intron | 0.03 |
g.2791 C > T | Intron | 0.14 |
g.3023 T > C | Intron | 0.03 |
g.3167 T > C | Intron | 0.03 |
g.3203 T > C | Intron | 0.17 |
g.3876 T > C | Exon 2 CDS | 0.14 |
g.4553 C > T | Exon 2 3′-UTR | 0.17 |
g.4918 C > T | Downstream 3′- UTR | 0.14 |
g.5089 G > C | Downstream 3′- UTR | 0.03 |
g.5110 G > C | Downstream 3′- UTR | 0.03 |