Table 1.
List of Variants Identified in TAOK1 in This Study
Individual | Chr | Position (GRCh37/hg19) | Ref | Alt | cDNA (GenBank: NM_020791.2) | Protein (GenBank: NP_065842.1) | Country of Origin | Sex | CADD score12 (v1.4) | De Novo | GnomAD | ACMG Scoring38 | Pathogenicity |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Initial Exome Screening | |||||||||||||
1 | 17 | 27778616 | A | G | c.50A>G | p.Glu17Gly | SA | F | 23.2 | yes | not reported | PS2, PM2 | likely path |
2 | 17 | 27822638 | A | G | c.892A>G | p.Lys298Glu | Israel | M | 27 | yes | not reported | PS2, PM2 | likely path |
3 | 17 | 27857617 | G | T | c.2341G>T | p.Glu781∗ | SA | M | 42 | yes | not reported | PVS1, PS2, PM2 | path |
Additional Carriers (Centogene) | |||||||||||||
4 | 17 | 27822660 | A | C | c.914A>C | p.Asp305Ala | Israel | F | 27.6 | yes | not reported | PS2, PM2 | likely path |
5 | 17 | 27837936 | C | T | c.1630C>T | p.Gln544∗ | Finland | M | 38 | yes | not reported | PVS1, PS2, PM2 | path |
Additional Carriers (GeneMatcher) | |||||||||||||
6 | 17 | 27804704 | C | T | c.332C>T | p.Ser111Phe | Germany | F | 26.8 | yes | not reported | PS2, PM2 | likely path |
7 | 17 | 27861140 | G | GC | c.2366_2367insC | p.Leu790Phefs∗3 | Norway | M | 35 | yes | not reported | PVS1, PS2, PM2 | path |
8 | 17 | 27861262 | G | T | c.2488G>T | p.Glu830∗ | Germany | M | 46 | yes | not reported | PVS1, PS2, PM2 | path |
Abbreviations are as follows: Chr—chromosome, Ref—reference allele, Alt—alternate allele, De novo—parents available to confirm de novo status,
SA—Saudi Arabia, likely path—likely pathogenic, and path—pathogenic.