Table 1.
SNP | Genotypes |
Discovery Phase |
Replication Phase |
Combined Study |
||||||
---|---|---|---|---|---|---|---|---|---|---|
Affected/controls | OR (95% CI)† | P value‡ | Affected/controls | OR (95% CI)† | P Value‡ | Affected/controls | OR (95% CI)† | P value‡ | ||
dbSNP: rs61926301 | GG | 538/649 | 1.00 (reference) | 2,133/4,389 | 1.00 (reference) | 2,671/5,038 | 1.00 (reference) | |||
GT | 787/712 | 1.30 (1.12–1.52) | 8.05 × 10−4 | 2,003/3,567 | 1.16 (1.08–1.25) | 9.08 × 10−5 | 2,790/4,279 | 1.24 (1.16–1.32) | 6.46 × 10−10 | |
TT | 177/129 | 1.59 (1.23–2.06) | 4.31 × 10−4 | 553/910 | 1.26 (1.12–1.42) | 1.26 × 10−4 | 730/1,039 | 1.33 (1.19–1.48) | 1.63 × 10−7 | |
Dominant | 1.35 (1.16–1.56) | 9.06 × 10−5 | 1.18 (1.10–1.27) | 4.01 × 10−6 | 1.25 (1.18–1.34) | 3.33 × 10−12 | ||||
Recessive | 1.37 (1.07–1.74) | 1.12 × 10−2 | 1.17 (1.05–1.31) | 5.29 × 10−3 | 1.20 (1.08–1.33) | 4.29 × 10−4 | ||||
Additive | 1.28 (1.14–1.43) | 2.92 × 10−5 | 1.14 (1.08–1.20) | 2.26 × 10−6 | 1.18 (1.13–1.24) | 7.97 × 10−12 | ||||
dbSNP: rs7959129 | GG | 505/630 | 1.00 (reference) | 1,686/3,583 | 1.00 (reference) | 2,191/4,213 | 1.00 (reference) | |||
GT | 753/668 | 1.38 (1.18–1.63) | 7.46 × 10−5 | 2,208/3,965 | 1.17 (1.08–1.27) | 7.31 × 10−5 | 2,961/4,633 | 1.21 (1.13–1.30) | 9.03 × 10−8 | |
TT | 259/212 | 1.49 (1.19–1.85) | 4.49 × 10−4 | 795/1,318 | 1.30 (1.17–1.45) | 1.58 × 10−6 | 1,054/1,530 | 1.32 (1.20–1.46) | 9.25 × 10−9 | |
Dominant | 1.40 (1.20–1.63) | 1.54 × 10−5 | 1.20 (1.12–1.30) | 1.05 × 10−6 | 1.24 (1.16–1.32) | 3.00 × 10−10 | ||||
Recessive | 1.24 (1.01–1.51) | 3.94 × 10−2 | 1.19 (1.08–1.31) | 4.83 × 10−4 | 1.19 (1.09–1.30) | 1.02 × 10−4 | ||||
Additive | 1.25 (1.13–1.39) | 3.28 × 10−5 | 1.15 (1.09–1.21) | 1.72 × 10−7 | 1.16 (1.11–1.22) | 1.17 × 10−10 |
Abbreviations are as follows: OR = odds ratio and CI = confidence interval.
The calculation of ORs and 95% CIs was conducted under assumption that variant alleles were risk alleles.
All p values were calculated with an unconditional logistic regression model after adjusting for gender, age group, smoking status, and drinking status.