Table 5.
Runtimes of AF4, STAR-Fusion and Manta in seconds (wall-clock time), where the same number of cores were used
| Samples | #readpairs (millions) | AF4 | AF4 | STAR- Fusion | Manta |
|---|---|---|---|---|---|
| Targeted | De novo | ||||
| Prc101 | 373.8 | 362 | 481 | 8475 | — |
| Prc108 | 464.5 | 340 | 462 | 16 075 | — |
| HC118 | 399.8 | 346 | 470 | 8801 | — |
| HC160 | 348.9 | 373 | 381 | 7903 | — |
| HC332 | 443.2 | 382 | 391 | 12 666 | — |
| T1 (0.001) | 1000.9 | 1000 | — | — | 1280 |
| T2 (0.002) | 938.8 | 938 | — | — | 1160 |
| T4 (0.004) | 1141.2 | 1268 | — | — | 2016 |
| T7 (0.006) | 998.1 | 1124 | — | — | 1160 |
| T10 (0.008) | 951.4 | 1104 | — | — | 1040 |
| T13 (0.01) | 1033.2 | 1217 | — | — | 1190 |
| T14 (0.01) | 1014.2 | 1117 | — | — | 1490 |
Note: Samples are from Sections 3.2 and 3.3. Times for Manta exclude the alignment and de-duplication steps.