Fig. 2.

Completeness and accuracy of haplotyping using Hi-C data for NA12878 (all statistics are for chromosome 20 only). (A) Error rates for haplotypes estimated using HapCUT2 on the MboI and Arima Hi-C datasets, and the integrated phasing algorithm applied to the Arima Hi-C data. (B) Haplotyping completeness (percentage of SNVs phased) across the three different methods. (C) Distribution of read-depth across SNV sites using the Arima and MboI Hi-C datasets (36× coverage). (D) Haplotype completeness for Arima Hi-C data as a function of sequence coverage