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Phasing completeness and accuracy on whole-genome Strand-seq data for NA12878
| Method | SNVs phased (%) | Switch error rate (%) | Mismatch error rate (%) | Absolute error rate (%) |
|---|---|---|---|---|
| Reads only | 71.38 | 0.091 | 0.268 | 0.905 |
| Integrated phasing | 94.56 | 0.0364 | 0.134 | 0.868 |
Note: Results are shown for data on chromosome 20 only. Switch and mismatch error rates were calculated by comparison to Platinum Genomes haplotypes for NA12878.
