Table 5.
Performance on synthetic 16S rRNA datasets (only Nanopore 2D reads were used for evaluation)
| Dataset (# reads) | Tool | # consensus | # mappable reads (mappable ratio %) | Error rate (%) | Run time (CPU min) |
|---|---|---|---|---|---|
| TideHunter | 3860 | 3853 (99.8) | 4.4 | 4.7 | |
| Simplea (14 580) | INC-seq | 2178 | 2174 (99.8) | 4.8 | 119.0 |
| TRF | 2542 | 2540 (99.9) | 4.5 | 14.5 | |
| TideHunter | 1596 | 1590 (99.6) | 3.1 | 1.5 | |
| Rep.1b (7 444) | INC-seq | 1076 | 1074 (99.8) | 4.7 | 50.4 |
| TRF | 1360 | 1356 (99.7) | 3.5 | 5.5 | |
| TideHunter | 1564 | 1558 (99.6) | 3.0 | 1.5 | |
| Rep.2c (2 904) | INC-seq | 1183 | 1178 (99.6) | 4.3 | 43.9 |
| TRF | 1330 | 1326 (99.7) | 3.4 | 4.8 |
a
Simple: simple community dataset with 3 bacteria.
b
Rep.1: replicate 1 of 10 bacteria community.
c
Rep.2: replicate 2 of 10 bacteria community.