Table 4. Active-site metal bonding distances for the lowest- and highest-dose structures with the coordinate error (Kumar et al., 2015 ▸) for the bonding atoms.
Distances, including the coordinate error (CE), are given in Å. No B conformation is given if the distances are above three standard deviations from an expected bond length. Bonds within one standard deviation of expectations (Zheng et al., 2008 ▸) are shown in bold, those with two standard deviations in italic, and finally those within three standard deviations, unlikely to be bonds, not highlighted at all. A difference is clearly seen between low and high doses for M2a and M2c, compared with M2b. The differences are significant when compared with the errors indicated by the precision of the atomic coordinates.
| Lowest DWD 0.13 MGy | Highest DWD 3.88 MGy | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| M1Mn | M1Mg | M2a | M2b | M2c | CE | M1Mn | M1Mg | M2a | M2b | M2c | CE | ||
| Conformation A | |||||||||||||
| Glu181(OE2) | 2.08 | 2.01 | 0.013 | 2.09 | 2.00 | 0.017 | |||||||
| Asp245(OD2) | 1.95 | 2.05 | 0.014 | 1.92 | 2.07 | 0.017 | |||||||
| Asp287(OD2) | 2.01 | 2.05 | 0.013 | 2.02 | 2.09 | 0.017 | |||||||
| EDO1(O2) | 2.17 | 2.23 | 0.014 | 0.019 | |||||||||
| HOH148 | 2.44 | 2.33 | 0.016 | 2.36 | 2.24 | 0.022 | |||||||
| Glu217(OE1) | 1.72 | 1.68 | 0.011 | 1.78 | 1.55 | 0.013 | |||||||
| Glu217(OE2) | 2.09 | 2.15 | 2.17 | 0.010 | 2.13 | 2.27 | 2.22 | 0.013 | |||||
| His220(NE2) | 3.73 | 2.99 | 2.21 | 0.011 | 3.46 | 2.85 | 2.15 | 0.014 | |||||
| Asp255(OD2) | 1.98 | 1.66 | 2.62 | 0.013 | 1.85 | 1.54 | 2.51 | 0.017 | |||||
| Asp257(OD1) | 1.86 | 2.59 | 2.69 | 0.014 | 1.90 | 2.51 | 3.50 | 0.015 | |||||
| HOH38 | 1.94 | 2.23 | 2.02 | 0.015 | 1.92 | 2.29 | 1.96 | 0.019 | |||||
| Conformation B | |||||||||||||
| Glu217(OE1) | 2.13 | 2.05 | 0.013 | 2.25 | 1.97 | 0.016 | |||||||
| Glu217(OE2) | 2.04 | 2.00 | 2.33 | 0.012 | 2.04 | 2.01 | 2.30 | 0.015 | |||||
| His220(NE2) | 3.06 | 2.29 | 1.83 | 0.012 | 2.87 | 2.22 | 1.81 | 0.015 | |||||
| Asp255(OD1) | 2.61 | 2.26 | 3.41 | 0.013 | 2.59 | 2.21 | 3.37 | 0.015 | |||||
| Asp255(OD2) | 2.62 | 2.24 | 2.90 | 0.014 | 2.61 | 2.27 | 2.91 | 0.016 | |||||
| Asp257(OD1) | 1.6 | 2.30 | 3.44 | 0.014 | 1.80 | 2.34 | 3.43 | 0.017 | |||||