Table 1:
Enzyme | Substrate | pH | Cofactor | kcat (s−1) | Km (mM) | kcat/Km (M−1 s−1) |
---|---|---|---|---|---|---|
YcjS | 1 | 8.0a | NAD+ | 0.65 ± 0.02 | 7.2 ± 0.8 | 90 ± 10 |
9.0b | 1.14 ± 0.06 | 8.9 ± 0.1 | 128 ± 7 | |||
2 | 8.0a | NAD+ | 0.58 ± 0.01 | 5.6 ± 0.6 | 103 ± 11 | |
9.0b | 1.2 ± 0.05 | 5.9 ± 0.7 | 200 ± 25 | |||
3 | 8.0a | NAD+ | 0.4 ± 0.01 | 2.0 ± 0.1 | 191 ± 9 | |
9.0b | 0.3 ± 0.01 | 1.6 ± 0.2 | 210 ± 20 | |||
4 | 8.0a | NAD+ | 0.17 ± 0.01 | 2.1 ± 0.1 | 81 ± 4 | |
9.0b | 0.4 ± 0.01 | 3.9 ± 0.4 | 100 ± 10 | |||
5 | 6.5c | NADH | 4.7 ± 0.3 | 0.5 ± 0.1 | 8500 ± 200 | |
6 | 7.0d | NADH | 22 ± 0.8 | 0.95 ± 0.1 | 23100 ± 2800 | |
8.0e | 18 ± 1.0 | 1.2 ± 0.3 | 15000 ± 3800 | |||
7 | 7.0d | NADH | 19 ± 1 | 0.80 ± 0.06 | 23400 ± 2200 | |
8.0e | 12.5 ± 0.7 | 0.92 ± 0.08 | 13600 ± 1400 | |||
YcjQ | 8 | 8.0f | NAD+ | 0.18 ± 0.01 | 5.1 ± 0.40 | 31 ± 2 |
9.0b | 0.23 ± 0.02 | 5.6 ± 0.8 | 41 ± 6 | |||
9 | 8.0f | NAD+ | 0.35 ± 0.03 | 12.5 ± 1.5 | 28 ± 3 | |
9.0b | 1.2 ± 0.05 | 12.0 ± 0.8 | 97 ± 6 | |||
12g | 7.0h | NADH | 18.5 ± 1.6 | 9.4 ± 1.1 | 2000 ± 290 | |
8.0i | 3.8 ± 0.1 | 1.5 ± 0.1 | 2600 ± 160 | |||
11g | 7.0h | NADH | 7.0 ± 0.2 | 2.3 ± 0.1 | 3100 ± 200 | |
8.0i | 9.7 ± 0.6 | 7.0 ± 0.6 | 1400 ± 160 | |||
YcjR | 6 | 7.0j | - | - | 240 ± 8k | |
8.0l | 19.2 ± 1.7 | 37 ± 4.4 | 520 ± 77 | |||
7 | 7.0j | 2.2 ± 0.3 | 34.5 ± 6.7 | 58 ± 14 | ||
8.0l | 4.0 ± 0.6 | 31 ± 6.5 | 130 ± 30 |
Reactions were carried out at 30 °C in 50 mM NH4+HCO3− buffer, pH 8.0 with 2.0 mM NAD+.
Reactions were carried out at 30 °C in 50 mM Ches/K+ buffer, pH 9.0 with 2.0 mM NAD+.
Reaction was carried out in 50 mM cacodylate/K+, pH 6.5 at 30 °C with 250 µM NADH.
Reactions were carried out at 30 °C in 50 mM cacodylate/K+ , pH 7.0 with 0.3 mM NAD+.
Reactions were carried out at 30 °C in 50 mM NH4+HCO3− buffer, pH 8.0 with 0.3 mM NADH.
Reactions were carried out at 30 °C in 50 mM HEPES/K+ buffer, pH 8.0 with 2.0 mM NAD+.
11 or 12 were generated in situ by the addition of excess YcjR (20 µM), 0.5 mM MnCl2, and 7 or 6, respectively. Concentrations of 11 and 12 were corrected based on the measured equilibrium constant (Keq = 4) between 7 and 11.
Reactions were carried out at 30 °C in 50 mM HEPES/K+ buffer, pH 7.0 with 0.3 mM NADH.
Reactions were carried out at 30 °C in 50 mM HEPES/K+ buffer, pH 8.0 with 0.3 mM NADH.
Reactions were carried out at 30 °C in 50 mM HEPES/K+ buffer, pH 7.0 with 0.3 mM NADH, 0.5 mM MnCl2, and excess YcjQ (10 µM).
Values based on fit of kinetic data to a linear equation with the slope giving the value of kcat/Km.
Reactions were carried out at 30 °C in 50 mM HEPES/K+ buffer, pH 8.0 with 0.3 mM NADH, 0.5 mM MnCl2, and excess YcjQ (10 µM).