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. Author manuscript; available in PMC: 2020 Mar 12.
Published in final edited form as: Biochemistry. 2019 Feb 20;58(10):1388–1399. doi: 10.1021/acs.biochem.8b01278

Table 1:

Kinetic constants with YcjS and YcjQ and their respective substrates.

Enzyme Substrate pH Cofactor kcat (s−1) Km (mM) kcat/Km (M−1 s−1)
YcjS 1 8.0a NAD+ 0.65 ± 0.02 7.2 ± 0.8 90 ± 10
9.0b 1.14 ± 0.06 8.9 ± 0.1 128 ± 7
2 8.0a NAD+ 0.58 ± 0.01 5.6 ± 0.6 103 ± 11
9.0b 1.2 ± 0.05 5.9 ± 0.7 200 ± 25
3 8.0a NAD+ 0.4 ± 0.01 2.0 ± 0.1 191 ± 9
9.0b 0.3 ± 0.01 1.6 ± 0.2 210 ± 20
4 8.0a NAD+ 0.17 ± 0.01 2.1 ± 0.1 81 ± 4
9.0b 0.4 ± 0.01 3.9 ± 0.4 100 ± 10
5 6.5c NADH 4.7 ± 0.3 0.5 ± 0.1 8500 ± 200
6 7.0d NADH 22 ± 0.8 0.95 ± 0.1 23100 ± 2800
8.0e 18 ± 1.0 1.2 ± 0.3 15000 ± 3800
7 7.0d NADH 19 ± 1 0.80 ± 0.06 23400 ± 2200
8.0e 12.5 ± 0.7 0.92 ± 0.08 13600 ± 1400
YcjQ 8 8.0f NAD+ 0.18 ± 0.01 5.1 ± 0.40 31 ± 2
9.0b 0.23 ± 0.02 5.6 ± 0.8 41 ± 6
9 8.0f NAD+ 0.35 ± 0.03 12.5 ± 1.5 28 ± 3
9.0b 1.2 ± 0.05 12.0 ± 0.8 97 ± 6
12g 7.0h NADH 18.5 ± 1.6 9.4 ± 1.1 2000 ± 290
8.0i 3.8 ± 0.1 1.5 ± 0.1 2600 ± 160
11g 7.0h NADH 7.0 ± 0.2 2.3 ± 0.1 3100 ± 200
8.0i 9.7 ± 0.6 7.0 ± 0.6 1400 ± 160
YcjR 6 7.0j - - 240 ± 8k
8.0l 19.2 ± 1.7 37 ± 4.4 520 ± 77
7 7.0j 2.2 ± 0.3 34.5 ± 6.7 58 ± 14
8.0l 4.0 ± 0.6 31 ± 6.5 130 ± 30
a

Reactions were carried out at 30 °C in 50 mM NH4+HCO3 buffer, pH 8.0 with 2.0 mM NAD+.

b

Reactions were carried out at 30 °C in 50 mM Ches/K+ buffer, pH 9.0 with 2.0 mM NAD+.

c

Reaction was carried out in 50 mM cacodylate/K+, pH 6.5 at 30 °C with 250 µM NADH.

d

Reactions were carried out at 30 °C in 50 mM cacodylate/K+ , pH 7.0 with 0.3 mM NAD+.

e

Reactions were carried out at 30 °C in 50 mM NH4+HCO3 buffer, pH 8.0 with 0.3 mM NADH.

f

Reactions were carried out at 30 °C in 50 mM HEPES/K+ buffer, pH 8.0 with 2.0 mM NAD+.

g

11 or 12 were generated in situ by the addition of excess YcjR (20 µM), 0.5 mM MnCl2, and 7 or 6, respectively. Concentrations of 11 and 12 were corrected based on the measured equilibrium constant (Keq = 4) between 7 and 11.

h

Reactions were carried out at 30 °C in 50 mM HEPES/K+ buffer, pH 7.0 with 0.3 mM NADH.

i

Reactions were carried out at 30 °C in 50 mM HEPES/K+ buffer, pH 8.0 with 0.3 mM NADH.

j

Reactions were carried out at 30 °C in 50 mM HEPES/K+ buffer, pH 7.0 with 0.3 mM NADH, 0.5 mM MnCl2, and excess YcjQ (10 µM).

k

Values based on fit of kinetic data to a linear equation with the slope giving the value of kcat/Km.

l

Reactions were carried out at 30 °C in 50 mM HEPES/K+ buffer, pH 8.0 with 0.3 mM NADH, 0.5 mM MnCl2, and excess YcjQ (10 µM).