TABLE 4.
Gene category |
T140 (%) |
T210 (%) |
|||||||||
Plateau | Top | Near Top | Mid | Bottom | Plateau | Top | Near Top | Mid | Bottom | In-Pasture | |
Metabolism | |||||||||||
Arginine and proline metabolism | 1.28 cde | 1.36 a | 1.33 ab | 1.30 bcd | 1.26 e | 1.31 bc | 1.30 bcde | 1.32 abc | 1.28 cde | 1.27 de | 1.29 cde |
Biotin metabolism | 0.13 bcde | 0.14 a | 0.14 ab | 0.13 cde | 0.11 e | 0.14 abc | 0.13 cde | 0.13 bcd | 0.13 cde | 0.11 e | 0.12 de |
Biosynthesis of unsaturated fatty acids | 0.36 bcd | 0.40 a | 0.41 a | 0.38 abc | 0.35 d | 0.39 ab | 0.39 ab | 0.40 a | 0.37 bcd | 0.36 d | 0.36 cd |
Tropane, piperidine and pyridine alkaloid biosynthesis | 0.13 cd | 0.15 a | 0.15 a | 0.14 cd | 0.13 d | 0.13 cd | 0.15 ab | 0.15 ab | 0.14 bc | 0.13 cd | 0.13 cd |
Fructose and mannose metabolism | 0.55 cde | 0.55 de | 0.54 e | 0.56 bcd | 0.57 a | 0.55 cde | 0.57 ab | 0.56 bcde | 0.56 bcd | 0.58 a | 0.56 abc |
Alanine, aspartate and glutamate metabolism | 0.89 abcd | 0.86 cde | 0.85 de | 0.88 bcde | 0.92 a | 0.90 abc | 0.86 de | 0.84 e | 0.87 bcde | 0.91 ab | 0.91 ab |
beta-Lactam resistance | 0.05 abcd | 0.04 e | 0.04 de | 0.05 bcd | 0.06 a | 0.04 de | 0.05 cd | 0.04 de | 0.05 cd | 0.06 ab | 0.06 abc |
Lipid biosynthesis proteins | 0.97 abc | 1.05 cd | 1.12 d | 1.03 cd | 0.93 a | 1.00 abc | 1.02 bc | 1.04 cd | 0.98 abc | 0.93 a | 0.94 ab |
Penicillin and cephalosporin biosynthesis | 0.08 abcd | 0.06 e | 0.07 de | 0.08 bcd | 0.10 a | 0.07 de | 0.08 cd | 0.07 d | 0.08 cd | 0.09 ab | 0.09 abc |
Nucleotide metabolism [Unclassified] | 0.02 ab | 0.01 f | 0.01 def | 0.01 cde | 0.02 ab | 0.02 a | 0.01 ef | 0.01 ef | 0.01 bcd | 0.01 ab | 0.01 abc |
Ubiquinone and other terpenoid-quinone synthesis | 0.28 ab | 0.26 cd | 0.25 d | 0.27 bcd | 0.28 ab | 0.28 a | 0.26 cd | 0.26 d | 0.28 abc | 0.29 a | 0.28 ab |
Biosynthesis of ansamycins | 0.06 a | 0.04 d | 0.05 ab | 0.06 ab | 0.06 a | 0.05 ab | 0.05 cd | 0.05 bc | 0.05 abc | 0.06 a | 0.05 abc |
Protein kinases | 0.39 cd | 0.40 cd | 0.38 d | 0.39 cd | 0.41 ab | 0.38 d | 0.40 bcd | 0.38 d | 0.40 cd | 0.42 a | 0.41 abc |
Genetic information processing | |||||||||||
Protein processing in endoplasmic reticulum | 0.07 abc | 0.06 de | 0.06 cde | 0.06 bcde | 0.07 abc | 0.08 a | 0.06 e | 0.06 e | 0.07 abc | 0.07 ab | 0.07 abcd |
Cellular processes and signaling | |||||||||||
Inorganic ion transport and metabolism [Unclassified] | 0.34 bc | 0.32 d | 0.33 cd | 0.34 bc | 0.36 a | 0.33 cd | 0.33 cd | 0.33 cd | 0.35 abc | 0.36 ab | 0.36 ab |
Significantly higher frequencies are highlighted in bold (P < 0.001, effect size > 0.7). Letters indicate significantly different values assessed between sections of both transects (Tukey’s HSD test P < 0.05).