Table 3.
CHR | Block | Haplotype | Case, Control Frequencies | Chi Square | P Value | Haplotypes | Risk/Protective |
---|---|---|---|---|---|---|---|
1 | Block 1 | GAT | 0.468, 0.052 | 13.512 | 2.00E-04 | rs10800201G; rs4657537A; rs4657583T** | Risk |
1 | GAC | 0.236, 0.226 | 0.009 | 0.9244 | rs10800201G; rs4657537A; rs4657583C | ||
1 | AGT | 0.156, 0.271 | 1.302 | 0.2538 | rs10800201A; rs4657537G; rs4657583T | ||
1 | AGC | 0.048, 0.284 | 7.097 | 0.0077 | rs10800201A; rs4657537G; rs4657583C | Protective | |
1 | GGT | 0.056, 0.034 | 0.173 | 0.6777 | rs10800201G; rs4657537G; rs4657583T | ||
1 | GGC | 0.004, 0.091 | 3.148 | 0.076 | rs10800201G; rs4657537G; rs4657583C | ||
1 | AAC | 0.002, 0.043 | 1.425 | 0.2326 | rs10800201A; rs4657537A; rs4657583C | ||
1 | AAT | 0.031, 0.001 | 0.831 | 0.3619 | rs10800201A; rs4657537A; rs4657583T | ||
1 | Block 2 | CG | 0.866, 0.497 | 10.664 | 0.0011 | rs859667C; rs10218696G | Risk |
1 | TA | 0.024, 0.247 | 7.654 | 0.0057 | rs859667T; rs10218696A | Protective | |
1 | TG | 0.055, 0.146 | 1.577 | 0.2092 | rs859667T; rs10218696G | ||
1 | CA | 0.055, 0.110 | 0.683 | 0.4085 | rs859667C; rs10218696A | ||
3 | Block 1 | GATG | 0.605, 0.179 | 12.016 | 5.00E-04 | rs978979G; rs7637449A; rs111934125T; rs9835332G** | Risk |
3 | AGCC | 0.105, 0.449 | 10.144 | 0.0014 | rs978979A; rs7637449G; rs111934125C; rs9835332C | Protective | |
3 | AGTC | 0.158, 0.229 | 0.538 | 0.4634 | rs978979A; rs7637449G; rs111934125T; rs9835332C | ||
3 | GGTC | 0.079, 0.056 | 0.126 | 0.7222 | rs978979G; rs7637449G; rs111934125T; rs9835332C | ||
3 | GGCC | 0.053, 0.086 | 0.294 | 0.5874 | rs978979G; rs7637449G; rs111934125C; rs9835332C | ||
6 | Block 1 | AC | 0.447, 0.821 | 9.448 | 0.0021 | rs1936797A; rs9491696C | Protective |
6 | GG | 0.447, 0.107 | 8.836 | 0.003 | rs1936797G; rs9491696G | Risk | |
6 | AG | 0.105, 0.071 | 0.223 | 0.6365 | rs1936797A; rs9491696G | ||
7 | Block 1 | TGTC | 0.814, 0.428 | 10.542 | 0.0012 | rs11761888T; rs17854248G; rs17164867T; rs968404C | Risk |
7 | CTCT | 0.131, 0.428 | 7.432 | 0.0064 | rs11761888C; rs17854248T; rs17164867C; rs968404T | Protective | |
7 | CGTC | 0.054, 0.036 | 0.127 | 0.7217 | rs11761888C; rs17854248G; rs17164867T; rs968404C | ||
7 | CTCC | 0.000, 0.036 | 1.371 | 0.2416 | rs11761888C; rs17854248T; rs17164867C; rs968404C | ||
7 | TGTT | 0.000, 0.036 | 1.371 | 0.2416 | rs11761888T; rs17854248G; rs17164867T; rs968404T | ||
7 | CTTC | 0.000, 0.036 | 1.378 | 0.2404 | rs11761888C; rs17854248T; rs17164867T; rs968404C | ||
8 | Block 1 | GT | 0.947, 0.679 | 8.386 | 0.0038 | rs13277113G; rs2618476T | Risk |
8 | AC | 0.053, 0.321 | 8.386 | 0.0038 | rs13277113A; rs2618476C | Protective | |
11 | Block 1 | CGCA | 0.868, 0.500 | 10.674 | 0.0011 | rs1030726C; rs1030723G; rs11033800C; rs11033801A | Risk |
11 | AGAG | 0.105, 0.214 | 1.49 | 0.2221 | rs1030726A; rs1030723G; rs11033800A; rs11033801G | ||
11 | AAAG | 0.026, 0.286 | 9.211 | 0.0024 | rs1030726A; rs1030723A; rs11033800A; rs11033801G | Protective | |
14 | Block 1 | TCGTT | 0.737, 0.357 | 9.515 | 0.002 | rs12891553T; rs34693535C; rs17211285G; rs17277221T; rs17277228T | Risk |
14 | CTTCC | 0.263, 0.643 | 9.515 | 0.002 | rs12891553C; rs34693535T; rs17211285T; rs17277221C; rs17277228C | Protective | |
16 | Block 1 | TG | 0.842, 0.500 | 8.933 | 0.0028 | rs1134760T; rs5923G | Risk |
16 | CA | 0.079, 0.357 | 7.888 | 0.005 | rs1134760C; rs5923A | Protective | |
16 | CG | 0.079, 0.143 | 0.694 | 0.4046 | rs1134760C; rs5923G | ||
17 | Block 1 | CC | 0.763, 0.295 | 14.384 | 1.00E-04 | rs13696C; rs1901187C** | Risk |
17 | CT | 0.184, 0.241 | 0.314 | 0.575 | rs13696C; rs1901187T | ||
17 | TT | 0.000, 0.331 | 14.608 | 1.00E-04 | rs13696T; rs1901187T* | Protective | |
17 | TC | 0.053, 0.134 | 1.335 | 0.2479 | rs13696T; rs1901187C | ||
19 | Block 1 | TA | 0.342, 0.750 | 10.739 | 0.001 | rs4801433T; rs4801200A | Protective |
19 | CT | 0.658, 0.250 | 10.739 | 0.001 | rs4801433C; rs4801200T | Risk |
CHR: Chromosome number;
Risk haplotypes (P < 1.0 × 10-4);
Protective haplotypes (P < 1.0 × 10-4).