Table IV.
Database algorithm | |||||||||
---|---|---|---|---|---|---|---|---|---|
miRNA ID | Proposed target gene | Ensembl gene ID | miRNA sequence | Diana | miRWalk | TargetScan | PicTar | miRDB | |
hsa-miR-340-3p | RPTOR | ENSG00000141564 | UCCGUCUCAGUUACUUUAUAGC | Score | 0.79 | – | – | – | 63 |
P-value | 0.03 | 0.008 | – | – | Rank 9 | ||||
Binding | 9mer | 9mer | – | – | 9mer | ||||
Region | UTR3 | UTR3 | – | – | UTR3 | ||||
hsa-miR-548o-3p | RPTOR | ENSG00000141564 | CCAAAACUGCAGUUACUUUUGC | Score | 0.71 | – | – | – | – |
P-value | 0.002 | 0.008 | – | – | – | ||||
Binding | 9mer | 9mer | – | – | – | ||||
Region | UTR3 | UTR3 | – | – | – | ||||
hsa-miR-3121-3p | RPTOR | ENSG00000141564 | UAAAUAGAGUAGGCAAAGGACA | Score | 0.997 | – | – | – | 64 |
P-value | 0.10 | – | – | – | Rank 6 | ||||
Binding | 8mer | – | – | – | 7mer | ||||
Region | UTR3 | – | – | – | UTR3 | ||||
hsa-miR-4802-3p | RPTOR | ENSG00000141564 | UACAUGGAUGGAAACCUUCAAGC | Score | 0.83 | – | – | – | 66 |
P-value | 0.04 | – | – | – | Rank 4 | ||||
Binding | 8mer | – | – | – | 7mer | ||||
Region | UTR3 | – | – | – | UTR3 | ||||
hsa-miR-2114-3p | RPTOR | ENSG00000141564 | CGAGCCUCAAGCAAGGGACUU | Score | 0.73 | – | – | – | 67 |
P-value | 0.02 | – | – | – | Rank 3 | ||||
Binding | 8mer | – | – | – | 7mer | ||||
Region | UTR3 | – | – | – | UTR3 | ||||
hsa-miR-3183 | RPTOR | ENSG00000141564 | GCCUCUCUCGGAGUCGCUCGGA | Score | 0.71 | – | – | – | 77 |
P-value | 0.003 | – | – | – | Rank 1 | ||||
Binding | 7mer | – | – | – | 7mer | ||||
Region | UTR3 | – | – | – | UTR3 | ||||
hsa-miR-654-5p | RPTOR | ENSG00000141564 | UGGUGGGCCGCAGAACAUGUGC | Score | – | – | – | – | 59 |
P-value | – | 0.008 | – | – | Rank 13 | ||||
Binding | – | 9mer | – | – | 7mer | ||||
Region | – | UTR3 | – | – | UTR3 |
miRNA, microRNA; miR, microRNA; UTR3, 3 untranslated region; RPTOR, regulatory-associated protein of mTOR complex I.