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. 2019 Apr 30;212(3):577–586. doi: 10.1534/genetics.118.301861

Figure 2.

Figure 2

Coverage of the CpG-SNP in those probes where the CpG-SNP is genotyped on the array, and those where it is imputed. The coverage of the CpG-SNP was higher in the probes where the CpG-SNP was genotyped. This result was replicated in an independent dataset imputed using the HRC reference panel (Systems Genomics of Parkinson’s Disease Cohort). When the CpG-SNP is imputed, there is a large difference in the coverage between datasets imputed using the 1000 Genomes Project Phase 3 reference panel (LBC-1KG), and those imputed using the HRC reference panel (LBC-HRC, Replication-HRC).