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. 2019 Jul 9;20:565. doi: 10.1186/s12864-019-5918-4

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — Metabolic context of the reconstructed σ⁵⁴ regulons in Clostridiales species. EBPs and regulated genes are involved in a amino acid catabolism and b fermentation. Individual EBPs and corresponding target genes are shown by matching background colors. c Functional and genomic context of representative EBPs regulons. EBP-encoding genes are shown by gray arrows, and target genes (shown by arrows) from the same metabolic pathway are shown with the same color. EBP binding sites are indicated by circle with matching colors, and σ⁵⁴ binding sites are marked by green circle