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. 2019 Jul 10;10:29. doi: 10.1186/s13100-019-0172-5

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Comparison of single-end and paired-end TE mappability. Each point represents 1 TE sequence. Paired-end mappability scores were generated from 76 base pair read alignments with <= 3 mismatches. Single-end mappability scores were generated from GEM Mappability (k = 76) with the default of a 4% mismatch rate. Mappability scores were aggregated for each TE as the percent of base pairs in the sequence with a unique mappability score