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. 2019 Jul 10;10:29. doi: 10.1186/s13100-019-0172-5

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Percent mappable elements for each family and subfamily of TEs. Colored by class distinction, each bar represents the percent unique elements in each subfamily. An element is only considered unique if every position in its sequence has a unique mappability score. Both GEM Mappability and Bowtie were run with an allowance of 3 mismatches