Table 5.
Summary of altered CGIs in the different cancer types
| UCSC CGI | Relation to UCSC CGI | Methylation Analyses | |||||||
|---|---|---|---|---|---|---|---|---|---|
| CRA | CRC | GC | BTC | PA | CLL | ||||
| Intrahepatic chol | Extrahepatic chol | Gallbladder cancer | |||||||
| chr5:140750050-140750264 | Island | Hypermethylation | NA | NA | NA | NA | NA | ND | NA |
| chr5:140762401-140762768 | Island | NA | NA | Hypermethylation | ND | ND | ND | ND | NA |
| chr5:140787447-140788044 | Island | NA | NA | Hypermethylation | NA | Hypermethylation | Hypermethylation | ND | NA |
| chr5:140855386-140856620 | Island | NA | Hypermethylation | Hypermethylation | NA | NA | NA | NA | NA |
| chr5:140857864-140858065 | Island | Hypermethylation | Hypermethylation | NA | NA | NA | NA | ND | NA |
| chr5:140864527-140864748 | Island | Hypermethylation | Hypermethylation | Hypermethylation | NA | NA | NA | NA | NA |
| chr5:140871064-140872335 | N-shelf | NA | NA | NA | NA | NA | NA | Hypomethylation | NA |
| chr5:140892914-140893189 | Island | Hypermethylation | Hypermethylation | NA | NA | NA | NA | ND | NA |
Note: CGI CpG island, CRA colorectal adenoma, CRC colorectal cancer, GC gastric cancer, BTC biliary tract cancer, chol cholangiocarcinoma, PA pilocytic astrocytoma, CLL chronic lymphocytic leukemia, NA no alteration, ND not detected