Table 3.
Chromosomal position, length and gene content of runs of homozygosity (ROH) islands shared by more than 50% (ROH frequency) of the chestnut Noriker sample.
| Chr. | Begin | End | Length (kb) | ROH frequency (%) | Known genes |
|---|---|---|---|---|---|
| 2 | 28 516.118 | 28 526.437 | 10.32 | 53.6 | – |
| 2 | 28 660.340 | 28 868.113 | 267.77 | 54.0 | TENT5B, KDF1, NUDC, NROB2, GPATCH3, GPN2, SFN, ZDHHC18, PIGV, ARID1A |
| 3 | 35 704.817 | 36 555.935 | 851.12 | 68.6 | SPG7, RPL13, CPNE7, DPEP1, CDK10, VPS9D1, FANCA, SPATA2L, ZNF276, SPIRE2, TCF25, MCR1, DEF8, DBNDD1, GAS8 |
| 3 | 37 444.692 | 38 217.472 | 772.78 | 58.3 | SLC39A8, BANK1 |
| 3 | 104 849.802 | 105 720.637 | 807.84 | 61.9 | LCORL |
| 9 | 74 959.554 | 75 661.942 | 702.39 | 62.0 | ZFAT |
| 10 | 26 105.708 | 26 644.961 | 539.25 | 52.8 | AURKC, ZNF304, ZNF772, ZNF773 |
| 11 | 23 203.615 | 25 657.958 | 2257.60 | 62.3 | FBXO47, RPL23, LASP1, C11H17orf98, PCGF2, CISD3, MLLT6, CWC25, PIP4K2B, PSMB3, SRCIN1, SOCS7, GPR179, NPEPPS, KNPB1, TBKBP1, MRPL10, OSBPL7, LRRC46, SCRN2, SP6, SP2, PRR15L, PNPO, CDK5RAP3, COPZ2, SNX11, CBX1, HOXB1, HOXB2, HOXB3, HOXB5, HOXB6, HOXB7, HOXB8, HOXB13, TTLL6, CALCOCO2, ATP5MC1, UBE2Z, SNF8, IGF2BP1, BAGALNT2, GNGT2, ABI3, PHOSPHO1, ZNF652, NXPH3, PHB, NGFR, SPOP, SLC35B1, FAM117A, KAT7, TAC4 |
| 11 | 29 652.068 | 31 309.554 | 1657.49 | 81.4 | COX11, STXBP4, HLF, MMD, TMEM100, PCTP, ANKFN1, C11H17orf67, DGKE |
| 11 | 31 530.857 | 31 614.545 | 83.69 | 52.8 | AKAP1 |