Table 1.
Gene | Species | Forward (5′ > 3′) | Reverse (5′ >3′) | Length | Application | Accession |
---|---|---|---|---|---|---|
RBP4 | Macaque | ATGAGGGTAAGGACATAAATGTCTTGC | CCTTAACAGCATCAAACAAGTCACCAACTC | 413 | Bis-seq, ChIP | AC194680 |
Macaque | ATGAGGGTAAGGATATAAATGTTTTGT | CCTTAACAACATCAAACAAATCACCAACTC | 413 | Bis-Seq | ||
Macaque | TCAAAGTGGTTTCAGGGAAGTGCC | GCCCTGGCTCAGTTACCCTGCACT | 467 | Bis-Seq | AC194680 | |
Macaque | TTAAAGTGGTTTTAGGGAAGTGTT | ACCCTAACTCAATTACCCTACACT | 467 | Bis-Seq | ||
PNMA5 | Macaque | TGGGAAGTAGGAGAGTTTATGTCACC | GTATGATCTCAGCTCACTGCAACCTC | 626 | Bis-seq, ChIP | AC193042 |
Macaque | TGGGAAGTAGGAGAGTTTATGTTATT | ATATAATCTCAACTCACTACAACCTC | 626 | Bis-Seq | ||
Human | TGCAGGAAGTAGGAGGGTTTATGTCACC | GCCAGGTCTCCCTGAAGTTCTGCCTG | 397 | Bis-seq, ChIP | U82671 | |
Human | TGTAGGAAGTAGGAGGGTTTATGTTATT | ACCAAATCTCCCTAAAATTCTACCTA | 397 | Bis-Seq | ||
SLIT1 | Macaque | ACAAGGCATCATCCATGGACTATGAGAC | CATTGGCTTTCTTGTATCTTGTTCACAG | 474 | Bis-seq, ChIP | AC215327 |
Macaque | ATAAGGTATTATTTATGGATTATGAGAT | CATTAACTTTCTTATATCTTATTCACAA | 474 | Bis-Seq | ||
Macaque | CCACCTGTCAGAAATGGAGGAAC | GGCCTCTAGGCCCCACCTGACT | 409 | Bis-Seq | AC215327 | |
Macaque | TTATTTGTTAGAAATGGAGGAAT | GACCTCTAAACCCCACCTAACT | 409 | Bis-Seq | ||
HTR1B | Macaque | AGGCATGGCTGGAGAAAGCCACAGGTC | TTCCCATCCTCCACCCCATCCACCTA | 411 | Bis-Seq, ChIP | AC195613 |
Macaque | AGGTATGGTTGGAGAAAGTTATAGGTT | TCCCATCCTCCCACCCCATCCACCTAA | 411 | Bis-Seq | ||
Macaque | GGAGCTTCCTTGGCCAGGAAGGGAA | CTCTTGGATCTGCAGACTTTGCCCACAG | 628 | Bis-Seq | AC195613 | |
Macaque | GGAGTTTTTTTGGTTAGGAAGGGAA | CACTTAAATCTACAAACTTTACCCACAA | 628 | Bis-Seq | ||
HTR2A | Macaque | GTAGGAGGAGTGACAGAGCAGGAAC | CAAGCAGGCAGCCCAGGCCTCAGTC | 265 | Bis-Seq, ChIP | AL160397 |
Macaque | GTAGGAGGAGTGATAGAGTAGGAAT | CAAACAAACAACCCAAACCTCAATC | 265 | Bis-Seq | ||
FSTL1 | Macaque | ATGCTGGACTCAGGATCTTCCCAGCAGAGC | GGCTGCGGCTGTGGCCAGGTGGGCGGTGC | 319 | Bis-Seq, ChIP | AC199131 |
Macaque | ATGTTGGATTTAGGATTTTTTTAGTAGAGT | AACTACYACTATAACCAAATAAACYTTAC | 319 | Bis-Seq | ||
MBD4 | Hu, mcq | ATGGGCACGACTGGGCTGGAGAGTCTGAGT | AGATAGACTTAATTTTTCATGATTTTCCCA | 1743 | OE,RT-PCR | NM003925 |
Hu, mcq | GGGAAAGAGTTGTGAAGCAAA | sh#1, position: 444–465 | 21 | Knockdown | NM003925 | |
Hu, mcq | GCAGGAAGATTTGATGTGTAC | sh#2, position: 483–504 | 21 | Knockdown | NM003925 | |
Hu, mcq | GAGAAGTATGAGGATACCTTT | sh#3, position: 1212–1233 | 21 | Knockdown | NM003925 | |
Hu, mcq | GAGCTTCATGGGATTGGTAAA | sh#4, position: 1774–1795 | 21 | Knockdown | NM003925 | |
Hu, mcq | GGTAAATATGGCAACGACTCT | sh#5, position: 1787–1808 | 21 | Knockdown | NM003925 | |
MBD1 | Hu, mcq | ATGGCTGAGGACTGGCTGGACTGCCCG | TCCCGGTTGAAGGCAATTCTCTGTGCT | 500 | ISH | NM015846 |
MBD2 | Hu, mcq | ATGCGCGCGCACCCGGGGGGAGGCCGCTGC | TTTCGGATCACTTCCTCCTTCTTCCATCCG | 500 | ISH | NM003927 |
MBD3 | Hu, mcq | ATGGAGCGGAAGAGGTGGGAGTGC | CCCTGCAGGCCCTTGGGGAGGTCCATGGT | 500 | ISH | NM003926 |
MBD4 | Hu, mcq | ATGGGCACGACTGGGCTGGAGAGTCTGAGT | AGATGGGATGTCAGGGCTGCCATGCTG | 500 | ISH | NM003925 |
MeCP2 | Hu, mcq | ATGGTAGCTGGGATGTTAGGGCTCAGGGAA | CGGGAGGGGCTCCCTCTCCCAGTTACCGTG | 500 | ISH | NM015846 |
GAPDH | Hu, mcq | CTCATGACCACAGTCCATGCC | AGGTCCACCACCCTGTTGCTG | 461 | RT-PCR | NM002046 |
MBD1 | Hu, mcq | CAAAGACTGTCGAGCACAGAG | ATCATGGGGCAGCTGCAGGAG | 142 | Real-time PCR | NM015846 |
MBD2 | Hu, mcq | GCTGGCAAGAGCGATGTCTAC | TGTAATTTACTAGGCATCATC | 141 | Real-time PCR | NM003927 |
MBD3 | Hu, mcq | TCGGCCGGCCACAGGGATGTC | ATCTTGCTCATCAGCATCTTG | 143 | Real-time PCR | NM003926 |
MBD4 | Hu, mcq | ACCTCTAGTGAGCGCCTAGTC | GCGATGGGTTCTTGTAGCAAG | 149 | Real-time PCR | NM003925 |
MeCP2 | Hu, mcq | ATGGTAGCTGGGATGTTAG | GCTGCACTGGCTCATGCTTGC | 144 | Real-time PCR | NM015846 |
GAPDH | Hu, mcq | AGGTGAAGGTCGGAGTCA | GGTCATTGATGGCAACAA | 98 | Real-time PCR | NM002046 |
OE, Overexpression.