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. 2013 Dec 11;33(50):19704–19714. doi: 10.1523/JNEUROSCI.2355-13.2013

Table 1.

Primers and oligonucleotides used in this study

Gene Species Forward (5′ > 3′) Reverse (5′ >3′) Length Application Accession
RBP4 Macaque ATGAGGGTAAGGACATAAATGTCTTGC CCTTAACAGCATCAAACAAGTCACCAACTC 413 Bis-seq, ChIP AC194680
Macaque ATGAGGGTAAGGATATAAATGTTTTGT CCTTAACAACATCAAACAAATCACCAACTC 413 Bis-Seq
Macaque TCAAAGTGGTTTCAGGGAAGTGCC GCCCTGGCTCAGTTACCCTGCACT 467 Bis-Seq AC194680
Macaque TTAAAGTGGTTTTAGGGAAGTGTT ACCCTAACTCAATTACCCTACACT 467 Bis-Seq
PNMA5 Macaque TGGGAAGTAGGAGAGTTTATGTCACC GTATGATCTCAGCTCACTGCAACCTC 626 Bis-seq, ChIP AC193042
Macaque TGGGAAGTAGGAGAGTTTATGTTATT ATATAATCTCAACTCACTACAACCTC 626 Bis-Seq
Human TGCAGGAAGTAGGAGGGTTTATGTCACC GCCAGGTCTCCCTGAAGTTCTGCCTG 397 Bis-seq, ChIP U82671
Human TGTAGGAAGTAGGAGGGTTTATGTTATT ACCAAATCTCCCTAAAATTCTACCTA 397 Bis-Seq
SLIT1 Macaque ACAAGGCATCATCCATGGACTATGAGAC CATTGGCTTTCTTGTATCTTGTTCACAG 474 Bis-seq, ChIP AC215327
Macaque ATAAGGTATTATTTATGGATTATGAGAT CATTAACTTTCTTATATCTTATTCACAA 474 Bis-Seq
Macaque CCACCTGTCAGAAATGGAGGAAC GGCCTCTAGGCCCCACCTGACT 409 Bis-Seq AC215327
Macaque TTATTTGTTAGAAATGGAGGAAT GACCTCTAAACCCCACCTAACT 409 Bis-Seq
HTR1B Macaque AGGCATGGCTGGAGAAAGCCACAGGTC TTCCCATCCTCCACCCCATCCACCTA 411 Bis-Seq, ChIP AC195613
Macaque AGGTATGGTTGGAGAAAGTTATAGGTT TCCCATCCTCCCACCCCATCCACCTAA 411 Bis-Seq
Macaque GGAGCTTCCTTGGCCAGGAAGGGAA CTCTTGGATCTGCAGACTTTGCCCACAG 628 Bis-Seq AC195613
Macaque GGAGTTTTTTTGGTTAGGAAGGGAA CACTTAAATCTACAAACTTTACCCACAA 628 Bis-Seq
HTR2A Macaque GTAGGAGGAGTGACAGAGCAGGAAC CAAGCAGGCAGCCCAGGCCTCAGTC 265 Bis-Seq, ChIP AL160397
Macaque GTAGGAGGAGTGATAGAGTAGGAAT CAAACAAACAACCCAAACCTCAATC 265 Bis-Seq
FSTL1 Macaque ATGCTGGACTCAGGATCTTCCCAGCAGAGC GGCTGCGGCTGTGGCCAGGTGGGCGGTGC 319 Bis-Seq, ChIP AC199131
Macaque ATGTTGGATTTAGGATTTTTTTAGTAGAGT AACTACYACTATAACCAAATAAACYTTAC 319 Bis-Seq
MBD4 Hu, mcq ATGGGCACGACTGGGCTGGAGAGTCTGAGT AGATAGACTTAATTTTTCATGATTTTCCCA 1743 OE,RT-PCR NM003925
Hu, mcq GGGAAAGAGTTGTGAAGCAAA sh#1, position: 444–465 21 Knockdown NM003925
Hu, mcq GCAGGAAGATTTGATGTGTAC sh#2, position: 483–504 21 Knockdown NM003925
Hu, mcq GAGAAGTATGAGGATACCTTT sh#3, position: 1212–1233 21 Knockdown NM003925
Hu, mcq GAGCTTCATGGGATTGGTAAA sh#4, position: 1774–1795 21 Knockdown NM003925
Hu, mcq GGTAAATATGGCAACGACTCT sh#5, position: 1787–1808 21 Knockdown NM003925
MBD1 Hu, mcq ATGGCTGAGGACTGGCTGGACTGCCCG TCCCGGTTGAAGGCAATTCTCTGTGCT 500 ISH NM015846
MBD2 Hu, mcq ATGCGCGCGCACCCGGGGGGAGGCCGCTGC TTTCGGATCACTTCCTCCTTCTTCCATCCG 500 ISH NM003927
MBD3 Hu, mcq ATGGAGCGGAAGAGGTGGGAGTGC CCCTGCAGGCCCTTGGGGAGGTCCATGGT 500 ISH NM003926
MBD4 Hu, mcq ATGGGCACGACTGGGCTGGAGAGTCTGAGT AGATGGGATGTCAGGGCTGCCATGCTG 500 ISH NM003925
MeCP2 Hu, mcq ATGGTAGCTGGGATGTTAGGGCTCAGGGAA CGGGAGGGGCTCCCTCTCCCAGTTACCGTG 500 ISH NM015846
GAPDH Hu, mcq CTCATGACCACAGTCCATGCC AGGTCCACCACCCTGTTGCTG 461 RT-PCR NM002046
MBD1 Hu, mcq CAAAGACTGTCGAGCACAGAG ATCATGGGGCAGCTGCAGGAG 142 Real-time PCR NM015846
MBD2 Hu, mcq GCTGGCAAGAGCGATGTCTAC TGTAATTTACTAGGCATCATC 141 Real-time PCR NM003927
MBD3 Hu, mcq TCGGCCGGCCACAGGGATGTC ATCTTGCTCATCAGCATCTTG 143 Real-time PCR NM003926
MBD4 Hu, mcq ACCTCTAGTGAGCGCCTAGTC GCGATGGGTTCTTGTAGCAAG 149 Real-time PCR NM003925
MeCP2 Hu, mcq ATGGTAGCTGGGATGTTAG GCTGCACTGGCTCATGCTTGC 144 Real-time PCR NM015846
GAPDH Hu, mcq AGGTGAAGGTCGGAGTCA GGTCATTGATGGCAACAA 98 Real-time PCR NM002046

OE, Overexpression.