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. 2019 Jul 11;75(1):90–101.e5. doi: 10.1016/j.molcel.2019.04.020
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and Virus Strains

E. coli BL21(DE3) Novagen 69450

Chemicals, Peptides, and Recombinant Proteins

Recombinant DNaseI (RNase free) Roche 03539121103
T4 PNK ThermoFisher EK0031
Graphene Oxide Sigma-Aldrich 763705-25ML
IPTG ThermoFisher R0392

Critical Commercial Assays

NEBNext Ultra II DNA Library Prep Kit for Illumina NEB E7645S

Deposited Data

Cas1Cas2Csn2 single complex bound to DNA This work PDB: 6QXF, EMD: 4668
Cas1Cas2Csn2 dimer complex bound to DNA This work PDB: 6QXT, EMD: 4670
Cas1Cas2Csn2 filament complex bound to DNA This work PDB: 6QY3, EMD: 4671

Oligonucleotides

acgaggagctattggcacaacttaca (prospacer duplex forward) Macrogen N/A
agttgtgccaatagctcctcgtcatt (prospacer duplex reverse) Metabion N/A
agatatcctacgaggttttagagctgtgttgtttcgaatggttccaaaacaaattctaaacgctaaagaggaag (CRISPR3 Leader-Repeat-Spacer duplex for in vitro integration reaction forward) Metabion N/A
cttcctctttagcgtttagaatttgttttggaaccattcgaaacaacacagctctaaaacctcgtaggatatct (CRISPR3 Leader-Repeat-Spacer duplex for in vitro integration reaction forward reverse) Metabion N/A

Recombinant DNA

pCRISPR3 (expressing full S. thermophilus CRISPR3 loci) Sapranauskas et al., 2011 N/A
pCas9- (Cas9 deletion, containing the rest of the CRISPR3 loci) Sapranauskas et al., 2011 N/A
pCas2- (Cas2 deletion, containing the rest of the CRISPR3 loci) Sapranauskas et al., 2011 N/A
pCsn2- (Csn2 deletion, containing the rest of the CRISPR3 loci) Sapranauskas et al., 2011 N/A
pCas1Strep (expressing C-Term Strep-tagged Cas1) This work N/A
pCR3ΔCRISPR (CRISPR region deletion, containing the rest of CRISPR3 loci) This work N/A
pCR3Δtracr (tracrRNA deletion, contain the rest of CRISPR3 locus) Karvelis et al., 2013 N/A

Software and Algorithms

Phyre2 webserver Kelley et al., 2015 http://www.sbg.bio.ic.ac.uk/∼phyre2/html/page.cgi?id=index
Chimera Goddard et al., 2007 https://www.cgl.ucsf.edu/chimera/
COOT Emsley et al., 2010 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
Refmac jelly-body refinement script Murshudov et al., 1997 https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/em_fitting/em_fitting.html
PHENIX real space refine Afonine et al., 2018 https://www.phenix-online.org/documentation/reference/real_space_refine.html
Motioncorr Li et al., 2013 https://cryoem.ucsf.edu/software/driftcorr.html
Motioncor2 Zheng et al., 2017 https://msg.ucsf.edu/em/software/motioncor2.html
Gctf Zhang, 2016 https://www.mrc-lmb.cam.ac.uk/kzhang/
Gautomatch N/A https://www.mrc-lmb.cam.ac.uk/kzhang/
IMAGIC van Heel and Keegstra, 1981 https://download.imagescience.de/index.html
RELION3 Zivanov et al., 2018 https://www3.mrc-lmb.cam.ac.uk/relion/index.php?title=Main_Page
cryoSPARC Punjani et al., 2017 https://guide.cryosparc.com/install.html
GraphPad Prism 8 N/A https://www.graphpad.com/scientific-software/prism/