Table 2.
Type of PCR | Elongation time, sa | MPRA library | Total read count | Reads with chimeric BC–ROI combinations, % | |||
---|---|---|---|---|---|---|---|
name | sizeb | R#1 | R#2 | R#1 | R#2 | ||
emulsion | 10 | library-71 | 22,621 | 526,056 | 497,217 | 0.580 | 0.555 |
30 | library-71 | 51,650 | 594,511 | 514,941 | 0.342 | 0.310 | |
30 | library-83 | 38,156 | 371,889 | 456,380 | 0.261 | 0.304 | |
conventional | 30 | library-71 | 85,249 | 776,878 | 784,138 | 0.336 | 0.337 |
30 | library-83 | 52,654 | 788,801 | 809,402 | 0.295 | 0.310 |
aIndicated elongation time was used in both rounds of PCR
bThe number of genuine BCs found in both replicates
R#1 and R#2 stand for replicate 1 and replicate 2, respectively