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. Author manuscript; available in PMC: 2019 Sep 1.
Published in final edited form as: J Biomed Inform. 2018 Jul 29;85:30–39. doi: 10.1016/j.jbi.2018.07.004

Table 3.

LD Pruning summary

R2 cut-off value Number of SNPs retained Percentage of SNPs removed
0.50 5,460 78.57%
0.80 6,849 73.12%
0.90 7,421 70.88%
0.99 8,666 65.99%
0.999 8,691 65.89%