Table 1.
Mapping results of RNA-Seq data from different virulence Foc strains in vitro and in planta samples
| Samplea | Clean Data Size (bp) |
Clean Reads Number | Total fungal Mapped Reads (%) | Unique fungal Match (%) | Multi-position fungal Match (%) |
|---|---|---|---|---|---|
| InVir 0 h-1 | 6147207600 | 40981384 | 87.1 | 56.31 | 30.78 |
| InVir 0 h-2 | 6180869700 | 41205798 | 86.25 | 57.98 | 28.27 |
| I_0h-3 | 6169962900 | 41133086 | 86.7 | 58.01 | 28.69 |
| InVir 24 h-1 | 10209826200 | 68065508 | 4.5 | 3.3 | 1.19 |
| InVir 24 h-2 | 15215636700 | 101437578 | 2.28 | 1.67 | 0.6 |
| InVir 24 h-3 | 10211927100 | 68079514 | 5.92 | 4.34 | 1.59 |
| InVir 120 h-1 | 10324005300 | 68826702 | 31.46 | 20.8 | 10.66 |
| InVir 120 h-2 | 10278412200 | 68522748 | 32.45 | 22.42 | 10.02 |
| InVir 120 h-3 | 10328451900 | 68856346 | 14.64 | 10.16 | 4.49 |
| WT 0 h-1 | 6060463800 | 40403092 | 82.7 | 55.36 | 27.34 |
| WT 0 h-2 | 6062771100 | 40418474 | 82.27 | 53.8 | 28.47 |
| WT 0 h-3 | 6104587500 | 40697250 | 86.83 | 57.85 | 28.99 |
| WT 24 h-1 | 27172202700 | 181148018 | 1.12 | 0.87 | 0.25 |
| WT 24 h-2 | 16219629900 | 108130866 | 2.62 | 1.94 | 0.68 |
| WT 24 h-3 | 19779039300 | 131860262 | 1.72 | 1.29 | 0.43 |
| WT 120 h-1 | 17173338600 | 114488924 | 2.09 | 1.5 | 0.6 |
| WT 120 h-2 | 10163430300 | 67756202 | 5.71 | 3.95 | 1.76 |
| WT 120 h-3 | 15385975500 | 102573170 | 2.39 | 1.69 | 0.71 |
aletters ‘WT’ and ‘InVir’ represent the wild strain foc-3b (lower virulence) and induced virulence variation Ra-4 (high virulence), respectively. The number after the letters represent the sampling times