Table 2:
SNPs outside of exon 2 and STRs variations in all DRB5 alleles examined.
| Exon 1 | Intron1 Homopolymers | Intron2 STR Structure | Intron 2 SNPs | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Allele | Codon16(aa) | poly(T) | poly(A) | 498 | 548 | 565 | 837 | 1480 | 1550 | 1670 | 1804 | 1890 | 122 | 391 | 412 | |||||||||
| DRB5*01:01:01 | AAG(K) | 14 | 20 | (GT)21 | (GA)5 | (GGAA) | (GA)4 | CA | T | G | T | T | G | T | A | T | C | A | A | C | ||||
| DRB5*01:01:01 STR1a | (GT)19 | (GA)5 | (GGAA) | (GA)4 | CA | T | G | T | T | G | T | A | T | C | A | A | C | |||||||
| DRB5*01:01:01v1b | (GT)18 | (GA)8 | (GGAA) | (GA)4 | CA | T | G | T | T | G | T | G | T | C | A | A | C | |||||||
| DRB5*01:01:01v1 STR1c | (GT)20 | (GA)8 | (GGAA) | (GA)4 | CA | T | G | T | T | G | T | G | T | C | A | A | C | |||||||
| DRB5*01:02e1d | AAG(K) | 16 | 19 | (GT)22 | (GA)8 | (GGAA) | (GA)4 | CA | (GA)7 | (GGAA) | (GA)4 | CA | T | G | T | T | G | G | G | C | C | A | A | C |
| DRB5*01:02e1 STR1e | (GT)21 | (GA)9 | (GGAA) | (GA)4 | CA | (GA)7 | (GGAA) | (GA)4 | CA | T | G | T | T | G | G | G | C | C | A | A | C | |||
| DRB5*01:03e1f | (GT)21 | (GA)9 | (GGAA) | (GA)4 | CA | (GA)7 | (GGAA) | (GA)4 | CA | T | G | T | T | G | G | G | C | C | A | A | C | |||
| DRB5*01:08Ne1g | (GT)20 | (GA)9 | (GGAA) | (GA)4 | CA | (GA)7 | (GGAA) | (GA)4 | CA | T | G | T | T | G | G | G | C | C | A | A | C | |||
| DRB5*02:02e1h | GTG(V) | 12 | 16 | (GT) | (GA)11 | (GGAA) | (GA)4 | CA | G | A | C | A | C | G | G | C | T | G | C | T | ||||
| DRB5*02:02e1 STR1i | (GT)15 | (GA)11 | (GGAA) | (GA)4 | CA | G | A | C | A | C | G | G | C | T | G | C | T | |||||||
| DRB5*02:03e1j | (GT)15 | (GA)11 | (GGAA) | (GA)4 | CA | G | A | C | A | C | G | G | C | T | G | C | T | |||||||
| patr-DRB5*01:02 | GTG(V) | 13 | 18 | (GT)4 GA(GT)7 | (GA)7 | (GCAA) | (GA)4 | CA | (GA)3 | T | G | C | A | C | G | G | C | C | A | A | C | |||
| mamu-DRB5*03:01 | del | 10 | (GT)2 | (GA)2 AAGAAA(GA)2 | AAGAAA | (GA)4 | (GC)4 | T | G | C | A | C | G | G | T | C | A | C | C | |||||
| DRB1*16:01:01:01 | (GT)18 | (GA)8 | (GGAA) | (GA)6 | ||||||||||||||||||||
| DRB1*16:02:01:01 | (GT)18 | (GA)8 | (GGAA) | (GA)6 | ||||||||||||||||||||
| DRB1*15:01:01:01 | (GT)22 | (GA)5 | CA | (GA)4 | CA | (GA)3 | (GGAA) | (GA)4 | ||||||||||||||||
| DRB1*09:01:02 | (GT)10 | (GA)9 | (GGAA) | (GA)4 | CA | GAAAGAGGGA | ||||||||||||||||||
DRB5*01:01:01_STR1 is an intronic variant of DRB5*01:01:01 with copy number variations in the intron 2 STR region
DRB5*01:01:01v1 is an intronic variant of DRB5*01:01:01
DRB5*01:01:01v1_STR1 is an intronic variant of DRB5*01:01:01 with copy number variations in the intron 2 STR region
DRB5*01:02e1 is an extended genomic sequence of DRB5*01:02
DRB5*01:02e1_STR1 is an intronic variant of DRB5*01:02 with copy numper variations in the intron 2 STR region
DRB5*01:03e1 is an extended genomic sequence of DRB5*01:03
DRB5*01:08Ne1 is an extended genomic sequence of DRB5*01:08N
DRB5*02:02e1 is an extended genomic sequence of DRB5*02:02
DRB5*02:02e1_STR1 is an extended genomic sequence of DRB5*02:02
DRB5*02:03e1 is an extended genomic sequence of DRB5*02:03
DRB1*16:02:01v2 is an intronic variant of DRB1*16:02:01
DRB1*16:02:01v1 is an intronic variant of DRB1*16:02:01