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. 2011 Jan 26;31(4):1246–1253. doi: 10.1523/JNEUROSCI.2765-10.2011

Figure 3.

Figure 3.

Example of the image-processing protocol of the fluorescent blood vessel images from the same sample as in Figure 2. The anti-collagen immunohistochemistry produced images of high quality that allowed for the semiautomated approach in this study. A, Raw image of an anti-collagen fluorescently stained section. B, The same image as in A after visually guided semiautomated filtering, thresholding and binarization. C, The same image as in B after erosion of the vasculature to a line set where the blood vessels are represented by lines of a single pixel width. Scale bar, 200 μm. A′, B′, C′, Enlarged subareas indicated in A in greater detail in the different image modalities described previously. D, Manual delineation of the raw fluorescent micrograph shows almost no deviation from the course of the eroded lines in C′.