KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| Rabbit polyclonal anti-calbindin | Swant | Cat# CB38; RRID: AB_2721225 |
| Monoclonal mouse anti-CD68 | Biorad | Cat# MCA1957; RRID: AB_322219 |
| Goat anti-ChAT | Millipore | Cat# AB144P; RRID: AB_2079751 |
| Rabbit polyclonal anti-cone arrestin | Millipore | Cat# AB15282; RRID:AB_1163387 |
| Mouse monoclonal anti-CtBP2 | BD Bioscience | Cat# 612044; RRID:AB_399431 |
| Mouse monoclonal anti-GFAP | Biolegend | Cat# 835301; RRID: AB_2565344 |
| Rabbit polyclonal anti-Iba1 | Wako | Cat# 019-19741; RRID: AB_839504 |
| Sheep polyclonal anti-mGluR6 | Catherine Morgans, Kirill Martemyanov, Theodore Wensel | N/A |
| Mouse monoclonal anti-PKCalpha | Sigma-Aldrich | Cat# P5704; RRID:AB_477375 |
| Rabbit anti-RBPMS | Phosphosolutions | Cat# 1830; RRID: AB_2492225 |
| Mouse monoclonal anti-SMI-32 | Stenberger Monoclonals | Cat# SMI-32P; RRID: AB_2314912 |
| Rabbit anti-Sox9 | Millipore | Cat#AB5535; RRID: AB_2239761 |
| Mouse monoclonal anti-synaptotagmin II | Zebrafish International Resource Center | Cat# znp-1; RRID: AB_10013783 |
| Mouse monoclonal anti-syntaxin1 | Sigma-Aldrich | Cat# S0664; RRID: AB_477483 |
| Mouse monoclonal anti-Trpm1-274 | Melina Agosto and Theodore Wensel | N/A |
| Donkey polyclonal anti-rabbit-Alexa 488 | Jackson Immunoresearch | Cat# 711-545-152; RRID:AB_2313584 |
| Donkey polyclonal anti-sheep-Alexa 633 | Molecular Probes | Cat# A21100; RRID:AB_10374307 |
| Donkey polyclonal anti-mouse-Dylight 405 | Jackson Immunoresearch | Cat# 715-475-150; RRID:AB_2340839 |
| Donkey polyclonal anti-mouse-Alexa 647 | Jackson Immunoresearch | Cat# 715-605-151; RRID:AB_2340863 |
| Donkey polyclonal anti-sheep-Alexa 647 | Jackson Immunoresearch | Cat# 713-605-147; RRID:AB_2340751 |
| Donkey polyclonal anti-goat-Alexa 594 | Jackson Immunoresearch | Cat# 705-585-147; RRID:AB_2340433 |
| Donkey polyclonal anti-rabbit-Alexa 647 | Jackson Immunoresearch | Cat# 711-605-152; RRID:AB_2492288 |
| Rabbit polyclonal anti-red/green opsin | Millipore | Cat# AB5405; RRID:AB_177456 |
| Goat polyclonal anti-OPN1SW | Santa Cruz Biotechnology | Cat# Sc-14363; RRID:AB_2158332 |
| Chemicals, Peptides, and Recombinant Proteins | ||
| Normal Donkey Serum | Jackson Immunoresearch | Cat# NC9624464 |
| Ames Medium | United States Biological | Cat# A1372-25 |
| Gold particles/microcarriers (1.6μm diameter) | Bio-Rad | Cat# 165-2264 |
| Vectashield | Vector Laboratories | Cat# H-1000; RRID: AB_2336789 |
| Experimental Models: Organisms/Strains | ||
| Mouse model: Grm6-tdTomato | Kerschensteiner et al., 2009 | N/A |
| Mouse model: C57BL/6-Gt(ROSA)26Sortm1(HBEGF)Awai/J (DTR) | The Jackson Laboratory | Cat# JAX:007900; RRID:IMSR_JAX:007900 |
| Mouse model: OPNSW1-Cre (BP-Cre) | Akimoto et al., 2004 | N/A |
| Mouse model: OPNMW1-Cre (HRGP-Cre) | Le et al., 2004 | N/A |
| Mouse model: hLMcone-GFP | Fei and Hughes, 2001 | N/A |
| Mouse model:B6.Cg-Gt(ROSA)26Sortm6(CAG-ZsGreen1)Hze/J (Ai6) | The Jackson Laboratory | Cat# JAX:007906; RRID:IMSR_JAX:007906 |
| Recombinant DNA | ||
| Plasmid: pCMV-CFP | Morgan et al., 2011 | N/A |
| Plasmid: pCMV-PSD95-YFP | A.M. Craig, University of British Columbia (Morgan et al., 2008) | N/A |
| Software and Algorithms | ||
| ImageJ | NIH | https://imagej.nih.gov/ij/, RRID: SCR_003070 |
| Amira | Thermo-Fisher Scientific | https://www.thermofisher.com/us/en/home/industrial/electron-microscopy/electron-microscopy-instruments-workflow-solutions/3d-visualization-analysis-software/amira-life-sciences-biomedical.html, RRID: SCR_014305 |
| Imaris | Bitplane | https://imaris.oxinst.com, RRID: SCR_007370 |
| MATLAB | Mathworks | https://www.mathworks.com/products/matlab.html,RRID: SCR_001622 |
| Igor Pro | Igor Pro | RRID:SCR_000325 |
| Object Finder | Della Santina et al., 2013 | https://lucadellasantina.github.io/ObjectFinder/ |
| Symphony and Stage | Mark Cafaro and Fred Rieke | https://github.com/Symphony-DAS/symphony-v1/wiki https://github.com/Stage-VSS/stage-v1 |