Figure 4.

Epigenetic marks associated with enhancers in rice genome

A. Numbers of identified enhancers that overlap with DHSs. B. Expression of genes in two biological replicates with proximal enhancers overlapping with DHS (open) or not (close) (^****, P < 10⁻¹⁰, Wilcoxon rank-sum test). In this analysis, STARR-seq enhancers uniquely identified in each replicate were included. C. Epigenetic signals for enhancers overlapping with DHSs (red) or not (blue). D. Epigenetic signal for enhancers in non-TE (red) or TE (blue) regions, respectively. The horizontal gray dotted line shows the relative enrichment of the examined epigenetic signal of random genomic sites as a control. DHS, DNase I hypersensitive site.