Table 3.
Selected stress tolerance, symbiotic and plant growth promoting functional genes found in the genome of Rhizobium sp. strain R1
| Feature ID | Type | Function | Aliases | Start | Length | Location |
|---|---|---|---|---|---|---|
| Exo X | ||||||
| JKFNCFJO_00944 | gene | Signal transduction histidine-protein kinase BaeS | baeS_1, 2.7.13.3 | 762 | 288 |
Contig: NODE_1409_length_750_cov_2.449333 474–762 (− Strand) |
| JKFNCFJO_01811 | gene | Exodeoxyribonuclease III | xthA, 3.1.11.2 | 47 | 342 |
Contig:NODE_2692_length_718_cov_3.898329 47–389 (+ Strand) |
| HtrA | ||||||
| JKFNCFJO_06099 | gene | Extracellular serine protease | 3.4.21.- | 16 | 255 |
Contig: NODE_11432_length_1141_cov_2.421560 16–271 (+Strand) |
| JKFNCFJO_02038 | gene | Microbial serine proteinase | aspA, 3.4.21.- | 2164 | 792 |
Contig:NODE_3069_length_2224_cov_3.164568 1,372–2,164 (−strand) |
| Nif genes | ||||||
| JKFNCFJO_00231 | gene | Cysteine desulfurase SufS | sufS, 2.8.1.7 | 11 | 327 |
Contig: NODE_344_length_1119_cov_2.287757 11–338 (+Strand) |
| JKFNCFJO_04114 | gene | Cysteine desulfurase IscS | iscS, 2.8.1.7 | 1,664 | 462 |
Contig: NODE_6900_length_1667_cov_2.808638 1,202–1,664 (−Strand) |
| Nod A | ||||||
| JKFNCFJO_00001 | gene | putative MFS-type transporter YcaD | ycaD_1 | 93 | 642 |
Contig: NODE_1_length_1071_cov_2.464052 93–735 (+Strand) |
| JKFNCFJO_00002 | gene | Riboflavin transporter | ribN | 1,091 | 357 |
Contig: NODE_1_length_1071_cov_2.464052 734–1,091 (− Strand) |
| Siderophore | ||||||
| JKFNCFJO_00628 | gene | Catecholate siderophore Receptor Fiu | fiu | 1,424 | 762 |
Contig: NODE_980_length_1476_cov_2.882791 662–1,424 (− Strand) |
| JKFNCFJO_07774 | gene | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | dhbA, 1.3.1.28 | 59 | 513 |
Contig: NODE_18194_length_629_cov_2.839428 59–572 (+ Strand) |
| IAA | ||||||
| JKFNCFJO_03956_CDS | CDS | Isoaspartyl peptidase | iaaA, 3.4.19.5 | 704 | 168 |
Contig: NODE_6586_length_704_cov_2.566761 536–704 (− Strand |
| JKFNCFJO_03956 | gene | Isoaspartyl peptidase | iaaA, 3.4.19.5 | 704 | 168 |
Contig: NODE_6586_length_704_cov_2.566761 536–704 (−Strand) |
| EptA gene | ||||||
| JKFNCFJO_06547 | gene | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase | mpl, 6.3.2.45 | 782 | 1,365 |
Contig: NODE_12707_length_2871_cov_2.986416 782–2,147 (+ Strand) |
| JKFNCFJO_05747 | gene | Phosphoethanolamine transferase EptA | eptA_3, 2.7.-.- | 42 | 534 |
Contig: NODE_10489_length_1026_cov_2.685185 42–576 (+Strand) |