Table 4.
Selected stress tolerance, symbiotic and plant growth promoting functional genes found in the genome of R. cellulosilyticum strain R3
| Feature ID | Type | Function | Aliases | Start | length | Location |
|---|---|---|---|---|---|---|
| Exo X gene | ||||||
| LKJIOFBO_00637 | gene | Signal transduction histidine-protein kinase ArlS | arlS, 2.7.13.3 | 5,173 | 1,365 |
NODE_12_length_14500_cov_30.995518 3,808–5,173 (−Strand) |
| LKJIOFBO_01604 | gene | Response regulator aspartate phosphatase J | rapJ_2, 3.1.-.- | 26,133 | 1,122 |
NODE_32_length_40656_cov_31.105864 26,133–27,255 (+Strand) |
| htrA | ||||||
| LKJIOFBO_03117 | gene | Serine protease Do-like HtrA | htrA_1, 3.4.21.107 | 6,151 | 1,203 |
Contig:NODE_64_length_16935_cov_30.627930 6,151–7,354 (+ Strand |
| LKJIOFBO_04119 | gene | Serine protease Do-like HtrA | htrA_2, 3.4.21.107 | 24,021 | 1,362 |
Contig:NODE_203_length_47982_cov_29.809929 24,021–25,383 (+ Strand) |
| Nif gene | ||||||
| LKJIOFBO_00593 | Gene | Cysteine desulfurase IscS | iscS_2, 2.8.1.7 | 40,060 | 1,146 | NODE_11_length_78586_cov_30.601507 |
| LKJIOFBO_01424_CDS | CDS | Putative cysteine desulfurase NifS | nifS, 2.8.1.7 | 72 | 264 | NODE_29_length_80092_cov_31.155697 |
| Nod A | ||||||
| LKJIOFBO_00005 | gene | Beta-N acetylglucosaminidase | lytD, 3.2.1.96 | 4,582 | 2,643 |
Contig: NODE_1_length_64013_cov_32.129894 4,582–7225 (+Strand) |
| LKJIOFBO_00006 | gene | Teichoic acid poly (ribitol-phosphate) polymerase | tarL, 2.7.8.- |
Contig: NODE_1_length_64013_cov_32.129894 7,268–9,128 (− Strand) |
||
| Siderophore | ||||||
| LKJIOFBO_02039 | gene | putative siderophore transport system permease protein YfiZ | yfiZ_1 | 14,769 | 1,002 |
Contig: NODE_38_length_39997_cov_29.245344 14,769–15,771 (+ Strand) |
| LKJIOFBO_02038 | gene | putative siderophore-binding lipoprotein YfiY | yfiY | 14,769 | 978 |
Contig: NODE_38_length_39997_cov_29.245344 13,660–14,638 (− Strand) |
| IAA | ||||||
| LKJIOFBO_01515 | gene | Inner membrane protein YiaA | yiaA | 11,965 | 264 |
Contig: NODE_30_length_44008_cov_32.195396 11,701–11,965 (− Strand) |
| LKJIOFBO_02665 | gene | tRNA dimethylallyltransferase | miaA, 2.5.1.75 | 10,955 | 945 | Contig: NODE_48_length_27057_cov_29.404369 |
| EptA | ||||||
| LKJIOFBO_03929 | gene | Heptaprenyl diphosphate synthase component 1 | hepS, 2.5.1.30 | 8,080 | 765 |
Contig: NODE_102_length_18176_cov_29.706535 7,315–8,080 (− Strand) |
| LKJIOFBO_00595 | gene | Septation ring formation regulator EzrA | ezrA | 43,376 | 1,689 |
Contig: NODE_11_length_78586_cov_30.601507 41,687–43,376 (− Strand) |