Table 5.
Nif - genes of Rhizobium sp. strain R1
| Genome ID | Accession | Annotation | Feature Type | Start | End | Length | Strand | PATRIC genus-specific families (PLfams) | PATRIC cross-genus families (PGfams) | AA Length | Gene Symbol | Product |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 55853 | 56356 | 504 | – | PGF_00025976 | 167 | nifQ | Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ | |
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 56356 | 57762 | 1407 | – | PGF_06674514 | 468 | nifB | Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB | |
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 57927 | 59501 | 1575 | – | PGF_03973235 | 524 | nifA | Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA | |
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 63101 | 63361 | 261 | – | PGF_01958698 | 86 | nifW | Nitrogenase-stabilizing/protective protein nifW | |
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 66771 | 67241 | 471 | – | PGF_00025961 | 156 | nifX | Nitrogenase FeMo-cofactor carrier protein NifX | |
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 67228 | 68613 | 1386 | – | PGF_00945843 | 461 | nifN | Nitrogenase FeMo-cofactor scaffold and assembly protein NifN | |
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 68624 | 69997 | 1374 | – | PLF_379_00003254 | PGF_00025964 | 457 | nifE | Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 70319 | 70981 | 663 | – | PGF_00025962 | 220 | nifX | Nitrogenase FeMo-cofactor carrier protein NifX | |
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 71250 | 72812 | 1563 | – | PGF_00025953 | 520 | nifK_1 | Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) | |
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 72868 | 74319 | 1452 | – | PLF_379_00003331 | PGF_00025951 | 483 | nifK_1 | Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
| 379,344 | 379.344.con.0068 | PATRIC | CDS | 74333 | 75214 | 882 | – | PGF_00025954 | 293 | nifH | Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |