Table 6.
Nif – and Nif + genes of R. cellulosilyticum strain R3
| Genome ID | Accession | Annotation | Feature Type | Start | End | Length | Strand | FIGfam ID | PATRIC genus-specific families (PLfams | PATRIC cross-genus families (PGfams) | AA Length | Gene Symbol | Product |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 379,345 | 379.345.con.0001 | PATRIC | CDS | 5136 | 5657 | 522 | – | FIG00017434 | 173 | nifE | [NiFe] hydrogenase HoxFUYH(E) maturation factor HoxW | ||
| 379,345 | 379.345.con.0001 | PATRIC | CDS | 3068 | 3526 | 459 | + | FIG00004977 | PGF_00025668 | 152 | nifX | NifX-associated protein | |
| 379,345 | 379.345.con.0001 | PATRIC | CDS | 649 | 1251 | 603 | – | PLF_44937_00001956 | PGF_03973235 | 200 | nifA | Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA | |
| 379,345 | 379.345.con.0002 | PATRIC | CDS | 37348 | 38454 | 1107 | – | 368 | nifA | Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA | |||
| 379,345 | 379.345.con.0003 | PATRIC | CDS | 4051 | 4725 | 675 | + | FIG00021623 | PGF_00025976 | 224 | nifQ | Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ | |
| 379,345 | 379.345.con.0003 | PATRIC | CDS | 42478 | 43125 | 648 | + | PLF_222_00002287 | PGF_00052664 | 215 | nifQ | Similar to nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ | |
| 379,345 | 379.345.con.0003 | PATRIC | CDS | 84935 | 85576 | 642 | – | FIG00021623 | PLF_222_00002287 | PGF_00052664 | 213 | nifQ | Similar to nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
| 379,345 | 379.345.con.0003 | PATRIC | CDS | 40839 | 41456 | 618 | + | FIG00021623 | PLF_222_00002287 | PGF_00052664 | 205 | nifQ | Similar to nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
| 379,345 | 379.345.con.0003 | PATRIC | CDS | 102443 | 103093 | 651 | + | FIG00021623 | PLF_222_00002287 | PGF_00052664 | 216 | nifQ | Similar to nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |