KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Software and Algorithms
Scrublet	This paper	https://github.com/AllonKleinLab/scrublet
Splatter v1.0.3	Zappia et al., 2017	https://github.com/Oshlack/splatter
t-SNE	van der Maaten, 2014	http://scikit-learn.org/stable/modules/generated/sklearn.manifold.TSNE.html
UMAP	Mclnnes et al., 2018	https://github.com/lmcinnes/umap
Louvain clustering	Blondel et al., 2008	https://github.com/taynaud/python-louvain
Other
Dataset: 12k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells	10X Genomics Single Cell Gene Expression Datasets	https://support.10xgenomics.com/single-cell-gene-expression/datasets/2.1.0/hgmm_12k
Dataset: Demuxlet batch 2 control PBMCs	Kang et al., 2018	GEO: GSM2560248
Dataset: 4k PBMCs from a Healthy Donor	10X Genomics Single Cell Gene Expression Datasets	https://support.10xgenomics.com/single-cell-gene-expression/datasets/2.1.0/pbmc4k
Dataset: 8k PBMCs from a Healthy Donor	10X Genomics Single Cell Gene Expression Datasets	https://support.10xgenomics.com/single-cell-gene-expression/datasets/2.1.0/pbmc8k
Dataset: Mouse Kit+ bone marrow, basal	Tusi et al., 2018	GEO: GSM2388072