Table 5.
DEGs number in fungal pathogen-infected plants.
| Number of up-regulated genes (Nu) | Number of down-regulated genes (Nd) | Differential regulation of DEGs | Number of up-regulated genes (Nu) | Number of down-regulated genes (Nd) | Differential regulation of DEGs | Number of up-regulated genes (Nu) | Number of down-regulated genes (Nd) | Differential regulation of DEGs | Tissues used in RNAseq | Reference | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 DAI | 4 DAI | 15 DAI | |||||||||
| Populus tremulodies/Ston1 | 133 | 323 (70.83) | −2.43* | 573 | 1895 (76.78) | −3.31* | 4403 | 6000 (57.68) | −1.36* | Leaves | 27 |
| P. deltoides/S. musiva | 463 | 21 (4.33) | 22.05** | 214 | 7 (3.17) | 30.57** | 1775 | 406 (18.61) | 4.37** | Leaves | 27 |
| P. balsamifera/S. populicola | 979 | 473 (32.58) | 2.07** | 331 | 226 (39.86) | 1.46* | 2060 | 1230 (37.39) | 1.67** | Leaves | 27 |
| 24 HPI | |||||||||||
| Populus trichocarpa resistant genotype BESC-22/Sphaerulina musiva | 3055 | 1817 | 1.68* | Stems | 29 | ||||||
| Populus trichocarpa susceptible genotype BESC-801/Sphaerulina musiva | 29 | 50 | −1.72* | Stems | 29 | ||||||
| 6 HPI | 36 HPI | 96 HPI | |||||||||
| Marssonina brunnea f. sp. Monogermtubi/Populus sect. Aigeiros (Aig) | 1453 | 523 (26.47) | 2.78** | 511 | 253 (33.12) | 2.02** | 1288 | 319 (20.47) | 4.04** | Leaves | 28 |
| M. brunnea f. sp. Multigermtubi/Populus sect. Leuce Duby (Leu) | 411 | 21 (4.86) | 19.57** | 591 | 424 (41.77) | 1.39** | 2,320 | 1,773 (43.32) | 1.30** | Leaves | 28 |
Notation: The negative values in this table represent the differential expressed genes (DEGs) are mainly down-regulated in this pathogen-plant interaction, while the positive values represent the DEGs are mainly up-regulated. Asterisks indicate the differential regulation of DEGs are significantly difference (the Chi-square test, the null hypothesis is Nd = Nu; *P < 0.05; **P < 0.01).