Table 3. Up_Down quantification relationship of transcriptomics and proteomics.
Transcriptomics | proteomics | |||||||
---|---|---|---|---|---|---|---|---|
Protein accession | Protein description | logFC (Wh/Gr) | p-value | q-value | Regulated Type | Wh/Gr Ratio | Wh/Gr P value | Regulated type |
Aco000471.1 | Putative L-ascorbate peroxidase 6 | 3.976 | 0.00047367 | 0.01422146 | _Up | 0.473 | 0.0000161 | Down_ |
Aco005951.1 | ”Chlorophyll a-b binding protein | 2.538 | 9.3709E−11 | 2.2658E−08 | _Up | 0.096 | 0.0121 | Down_ |
Aco006504.1 | ”Preprotein translocase subunit SECY | 1.038 | 9.4357E−05 | 0.00405446 | _Up | 0.404 | 0.0000372 | Down_ |
Aco008453.1 | Chloroplastic lipocalin | 1.198 | 0.00026127 | 0.00899766 | _Up | 0.521 | 0.000000311 | Down_ |
Aco013684.1 | ”PsbP domain-containing protein 1 | 1.368 | 7.7316E−05 | 0.0034582 | _Up | 0.236 | 0.0000624 | Down_ |
Aco018356.1 | ”Divinyl chlorophyllide a 8-vinyl-reductase | 1.156 | 0.00013306 | 0.00531348 | _Up | 0.317 | 0.00000147 | Down_ |
Aco021970.1 | ”Photosynthetic NDH subunit of lumenal location 3 | 1.580 | 0.00097191 | 0.02464119 | _Up | 0.162 | 0.00000133 | Down_ |
Aco023399.1 | ”Rhodanese-like domain-containing protein 14 | 1.157 | 0.00193652 | 0.04114251 | _Up | 0.479 | 0.000103 | Down_ |
Aco024665.1 | ”Lycopene beta cyclase | 1.355 | 2.2429E−05 | 0.00126599 | _Up | 0.714 | 0.0279 | Down_ |
Notes.
Protein accession numbers can be found at https://phytozome.jgi.doe.gov/pz/portal.html.