Table S5. GeneAnalytics program mapping of diseases with 10 highest match scores for 169 DEGs in TAMG and NMG.

Disease	Genes matched to disease type	No. of genes in disease type	Score
Lung cancer	KRT14, KRT17, SFTPC, SFTPD, VEGFD, ATM, NAPSA, NMB, SCGB1A1, DSC3, SFTPA2, BNC1, BTNL9, CAB39L, LRRN3, SFTPB	16	9.81
Pulmonary fibrosis, idiopathic	SFTPA2, SFTPA1, SFTPC, CCR7, SCGB1A1, SFTPB, SFTPD	7	8.80
Breast cancer	ATM, KRT14, KRT17, CYP19A1, TWIST1, VEGFD, AMDHD1, BBOX1, DSC3, IRX1, KCNIP3, LAMP5, MAP2, SCUBE1, TCEAL2	15	8.33
Polycystic kidney disease	BBOX1, CYP4F3, DPEP1, IGFBP6, PRRX1, ADAMTS15, AMDHD1, CNKSR2, LAMP5, MAP1B, MYL9, NAPSA, TWIST1	13	7.22
Neuroblastoma	CYP21A2, KRT1, CADPS, MAP1B, MAP2, ADM, CADPS2, SNKSR2, EPB41L4B, KIF1A, MYL9, NNAT, RAB3IL1, TCEAL2	14	7.03
Respiratory distress syndrome in premature infants	SFTPB, SFTPC, SFTPA1	3	6.83
Dilated cardiomyopathy	MYH6, CRYAB, DSC2, DTNA, MYBPC2, SYNE1, TWIST1	7	6.50
Lung cancer susceptibility 3	SCGB1A1, SFTPD, VEGFD, NAPSA, SFTPB, SFTPC, NPTX2, PLXNB3, SFTPA2, VIPR1	10	6.48
Colorectal cancer	DPEP1, ATM, CACNA1G, SYNE1, VEGFD, NEUROD1, CAB39L, CD226, LRRN3, MYL9, TFDP3	11	6.02
Tuberous sclerosis complex	CADPS, CNKSR2, DTNA, PRRX1, CYP4F3, EPB41L4B, LAMP5, NEUROD1, NGEF, OLFM3, SCN2B	11	5.97

DEG, differentially expressed gene; NMG, non-myasthenia gravis thymoma; TAMG, thymoma-associated myasthenia gravis.