Table 5.
Primer Sequences for the Simple, Multiplexed, PCR-Based Barcoding of DNA for Sensitive Mutation Detection Using Sequencing Assays
| Assay name | Mutation | Primer sequences |
|---|---|---|
| BRAF_305 | V600E | Forward: 5′-GGACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNNNNNNNNNATGGGAAAGAGTGTCCCAAACTGATGGGACCCACTCCATCG-3′ |
| Reverse: 5′-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGACCTCACAGTAAAAATAGGTGATTTTGGTCTAGC-3′ | ||
| KRAS_329 | G12D | Forward: 5′-GGACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNNNNNNNNNATGGGAAAGAGTGTCCGCCTGCTGAAAATGACTGAATATAAACTTG-3′ |
| Reverse: 5′-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGCTGTATCGTCAAGGCACTCTT-3′ | ||
| NRAS_881_3 | Q61R | Forward: 5′-GGACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNNNNNNNNNATGGGAAAGAGTGTCCTTGGTCTCTCATGGCACTGTACTCTTCT-3′ |
| Reverse: 5′-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTAACCTGTTTGTTGGACATACTGGATACAGC-3′ | ||
| PIK3CA_234 | H1047R | Forward: 5′-GGACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNNNNNNNNNATGGGAAAGAGTGTCCCTGAGCAAGAGGCTTTGGAGTATTTCATG-3′ |
| Reverse: 5′-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCCAATCCATTTTTGTTGTCCAGCCAC-3′ |