Table 1.
Overview of MADS-box genes identified in tomato. List of predicted genes and related information include gene name, gene locus, molecular details, classification of two types according to the phylogenetic analysis shown in Figure S1, homologs in Arabidopsis, as well as the reference of the gene function investigation. pI, isoelectric point; MW, molecular weight.
| Gene Name | Gene Locus | Protein | Type | Reference | ||
|---|---|---|---|---|---|---|
| Length (aa) | MW (Da) | pI | ||||
| SlMBP1/SlGLO1/PI/LePI-B | Solyc08g067230.2.1 | 210 | 24740.2 | 8.69 | Type II | [36] |
| SlMBP2/SlGLO2/LePI/TPI | Solyc06g059970.2.1 | 214 | 24867.4 | 9.49 | Type II | [37] |
| SlMBP3/ SlAGL11 | Solyc06g064840.3.1 | 237 | 27469.6 | 9.25 | Type II | [38] |
| SlMBP6/SlAGL6 | Solyc01g093960.2.1 | 252 | 28608.5 | 8.37 | Type II | [39,40,41] |
| SlMBP7/LeFUL2 | Solyc03g114830.2.1 | 247 | 28614.3 | 9.31 | Type II | [22,40,42,43,44] |
| SlMBP8 | Solyc12g087830.1.1 | 198 | 22643.3 | 8.97 | Type II | [45,46] |
| SlMBP10 | Solyc02g065730.1.1 | 234 | 27368.1 | 10.12 | Type II | |
| SlMBP11/AGL15-like | Solyc01g087990.2.1 | 271 | 30847 | 6.01 | Type II | [47] |
| SlMBP13 | Solyc08g080100.2.1 | 224 | 25839 | 9.76 | Type II | |
| SlMBP14 | Solyc12g056460.1.1 | 206 | 23968.4 | 6.57 | Type II | |
| SlMBP15 | Solyc12g087830.2.1 | 204 | 23667.2 | 8.35 | Type II | |
| SlMBP18/SlFYFL | Solyc03g006830.2.1 | 222 | 25369.2 | 9.46 | Type II | [48] |
| SlMBP19 | Solyc06g035570.1.1 | 54 | 6224.26 | 11.29 | Type I | |
| SlMBP20 | Solyc02g089210.2.1 | 250 | 28589.2 | 9.87 | Type II | [44] |
| SlMBP21 | Solyc12g038510.1.1 | 250 | 28442.4 | 9.26 | Type II | [49,50,51] |
| SlMBP22 | Solyc11g005120.1.1 | 238 | 27791.6 | 6.96 | Type II | |
| SlMBP23/TDR3 | Solyc10g017630.2.1 | 166 | 19196.3 | 9.49 | Type II | |
| SlMBP24 | Solyc04g076280.3.1 | 235 | 26483.6 | 7.67 | Type I | |
| SlMBP25 | Solyc05g015730.1.1 | 80 | 9311.97 | 11.01 | Type II | |
| TAG1 | Solyc02g071730.2.1 | 248 | 28723.6 | 9.97 | Type II | [52,53] |
| TAGL1 | Solyc07g055920.2.1 | 267 | 29940.5 | 9.56 | Type II | [20,21,52,54] |
| TAGL2 | Solyc05g015750.2.1 | 241 | 27579.3 | 9.07 | Type II | [55,56] |
| TAGL11 | Solyc11g028020.1.1 | 223 | 26051.7 | 9.76 | Type II | [38,56] |
| TAGL12 | Solyc11g032100.1.1 | 201 | 23104.8 | 6.94 | Type II | [56] |
| TAP3/LeAP3/LeDEF | Solyc04g081000.2.1 | 228 | 26478.2 | 9.76 | Type II | [54,57,58,59] |
| MADS-RIN | Solyc05g012020.2.1 | 242 | 27968.4 | 8.00 | Type II | [19,60,61,62,63] |
| MADS-MC | Solyc05g056620.1.1 | 244 | 28660.6 | 8.44 | Type II | [64] |
| JOINTLESS | Solyc11g010570.1.1 | 265 | 30426.3 | 7.39 | Type II | [64,65,66,67,68] |
| LeAP1 | Solyc05g012020.3.1 | 213 | 25077.3 | 5.47 | Type II | [40] |
| TM4/TDR4/LeFUL1 | Solyc06g069430.2.1 | 245 | 28290 | 9.57 | Type II | [22,42,43,59] |
| TM5/TDR5/LeSEP3 | Solyc05g015750.3.1 | 224 | 25999.3 | 9.79 | Type II | [40] |
| TM6/TDR6 | Solyc02g084630.2.1 | 225 | 26092.7 | 9.71 | Type II | [69] |
| TM8/TDR8 | Solyc03g019710.2.1 | 177 | 20703.9 | 10.44 | Type II | [70] |
| SlMADS1 | Solyc03g114840.2.1 | 246 | 28398.2 | 8.88 | Type II | [55,71] |
| SlMADS2 | Solyc01g060300.1.1 | 211 | 23122.6 | 9.36 | Type I | |
| SlMADS3 | Solyc01g060310.1.1 | 139 | 15117.5 | 8.99 | Type I | |
| SlMADS4 | Solyc01g060284.1.1 | 197 | 21565.5 | 8.63 | Type I | |
| SlMADS5 | Solyc01g066500.1.1 | 309 | 34544.4 | 4.75 | Type I | |
| SlMADS6/TM29/LeSEP1 | Solyc02g089200.2.1 | 246 | 28481.3 | 8.29 | Type II | [39,41] |
| SlMADS7 | Solyc01g103870.1.1 | 125 | 14435.6 | 9.54 | Type I | |
| SlMADS8 | Solyc06g071300.1.1 | 130 | 15009.1 | 5.14 | Type I | |
| SlMADS9 | Solyc03g007020.1.1 | 215 | 24702 | 9.21 | Type I | |
| SlMADS10 | Solyc04g064860.1.1 | 233 | 25871.3 | 7.92 | Type I | |
| SlMADS11 | Solyc04g054517.1.1 | 138 | 15663.1 | 7.75 | Type I | |
| SlMADS12 | Solyc04g056550.1.1 | 182 | 20838.7 | 5.14 | Type I | |
| SlMADS13 | Solyc04g056740.1.1 | 180 | 20521.5 | 7.44 | Type I | |
| SlMADS14 | Solyc06g054680.1.1 | 180 | 21152.8 | 7.19 | Type I | |
| SlMADS15 | Solyc06g059780.1.1 | 180 | 21057.6 | 6.37 | Type I | |
| SlMADS16 | Solyc10g050950.1.1 | 161 | 18602.2 | 6.80 | Type I | |
| SlMADS17 | Solyc10g050900.1.1 | 169 | 19796.5 | 7.83 | Type I | |
| SlMADS18 | Solyc10g050940.1.1 | 169 | 19623.3 | 7.77 | Type I | |
| SlMADS19 | Solyc01g097850.1.1 | 172 | 20073.9 | 7.35 | Type I | |
| SlMADS20 | Solyc03g034260.1.1 | 184 | 21441 | 6.29 | Type I | |
| SlMADS21 | Solyc10g018070.1.1 | 119 | 13063.9 | 10.14 | Type I | |
| SlMADS22 | Solyc10g018080.1.1 | 151 | 17218.5 | 7.04 | Type I | |
| SlMADS23 | Solyc10g018110.1.1 | 184 | 20762.4 | 6.55 | Type I | |
| SlMADS24 | Solyc04g025970.1.1 | 117 | 13333.4 | 10.16 | Type I | |
| SlMADS25 | Solyc01g010300.1.1 | 88 | 10052.7 | 10.79 | Type I | |
| SlMADS26 | Solyc02g032000.1.1 | 97 | 10944.7 | 10.32 | Type I | |
| SlMADS27 | Solyc03g119680.1.1 | 177 | 20293.2 | 7.26 | Type I | |
| SlMADS28 | Solyc09g061950.1.1 | 173 | 20138.1 | 9.33 | Type I | |
| SlMADS29 | Solyc01g106710.1.1 | 221 | 25105.7 | 10.23 | Type I | |
| SlMADS30 | Solyc04g025030.1.1 | 135 | 15411 | 10.37 | Type I | |
| SlMADS31 | Solyc04g025110.1.1 | 130 | 14313.7 | 10.26 | Type I | |
| SlMADS32 | Solyc01g106720.1.1 | 211 | 23531.2 | 10.35 | Type I | |
| SlMADS33 | Solyc01g106730.1.1 | 221 | 23888.6 | 10.14 | Type I | |
| SlMADS34 | Solyc04g047870.1.1 | 190 | 21695.2 | 10.70 | Type I | |
| SlMADS35 | Solyc10g012180.1.1 | 167 | 18824.5 | 5.38 | Type I | |
| SlMADS36 | Solyc10g012200.1.1 | 167 | 19113.1 | 8.98 | Type I | |
| SlMADS37 | Solyc11g067163.1.1 | 166 | 18919.9 | 7.67 | Type I | |
| SlMADS38 | Solyc01g066730.2.1 | 300 | 33023.4 | 5.04 | Type I | |
| SlMADS39 | Solyc01g098070.1.1 | 155 | 17200.8 | 10.09 | Type I | |
| SlMADS40 | Solyc01g098060.1.1 | 152 | 17191.5 | 9.84 | Type I | |
| SlMADS41 | Solyc03g062820.1.1 | 145 | 16350.8 | 9.23 | Type I | |
| SlMADS42 | Solyc01g098050.1.1 | 160 | 18178 | 10.45 | Type I | |
| SlMADS43 | Solyc05g013370.1.1 | 232 | 26476.7 | 5.46 | Type I | |
| SlMADS44 | Solyc05g046345.1.1 | 250 | 28489.8 | 5.47 | Type I | |
| SlMADS45 | Solyc04g025050.1.1 | 56 | 6259.52 | 11.07 | Type I | |
| SlMADS46 | Solyc07g017343.1.1 | 226 | 26532.7 | 5.2 | Type I | |
| SlMADS47 | Solyc00g179240.1.1 | 55 | 6310.11 | 11.16 | Type I | |
| SlMADS48 | Solyc07g052707.1.1 | 195 | 21878.8 | 4.86 | Type I | |
| SlMADS49 | Solyc07g052700.2.1 | 190 | 21334.2 | 7.41 | Type I | |
| SlMADS50 | Solyc11g069770.2.1 | 175 | 20171.9 | 5.45 | Type I | |
| SlMADS51 | Solyc01g106700.2.1 | 213 | 24279.5 | 7.35 | Type I | |
| SlMADS52 | Solyc03g115910.1.1 | 417 | 47275.1 | 5.82 | Type I | |
| SlMADS53 | Solyc10g012380.1.1 | 149 | 17086.7 | 5.29 | Type I | |
| SlMADS54 | Solyc10g012390.1.1 | 149 | 17086.7 | 5.29 | Type I | |
| SlMADS55 | Solyc11g069770.1.1 | 181 | 20857.8 | 5.20 | Type I | |
| SlMADS56 | Solyc12g042967.1.1 | 225 | 25552.3 | 9.05 | Type I | |
| SlMADS57 | Solyc11g020620.1.1 | 342 | 38747.9 | 5.42 | Type I | |
| SlMADS58 | Solyc11g020660.1.1 | 312 | 35558.7 | 4.61 | Type I | |
| SlMADS59 | Solyc11g020320.1.1 | 275 | 31757.7 | 6.68 | Type I | |
| SlMADS60 | Solyc01g103550.1.1 | 311 | 35839.7 | 7.87 | Type I | |
| SlMADS61 | Solyc01g060310.2.1 | 136 | 15230.6 | 6.16 | Type I | |
| SlMADS62 | Solyc12g016170.1.1 | 219 | 25087.7 | 6.57 | Type I | |
| SlMADS63 | Solyc12g016180.1.1 | 219 | 25207.8 | 6.57 | Type I | |
| SlMADS64 | Solyc12g016150.1.1 | 154 | 17645.1 | 5.38 | Type I | |
| SlMADS65 | Solyc12g017300.1.1 | 154 | 17740.1 | 5.11 | Type I | |
| SlMADS66 | Solyc12g005210.1.1 | 88 | 9985.65 | 10.41 | Type I | |
| SlMADS67 | Solyc01g102260.2.1 | 249 | 27882.8 | 9.66 | Type I | |
| SlMADS68 | Solyc05g047712.1.1 | 156 | 18199.1 | 8.89 | Type I | |
| SlMADS69 | Solyc07g043080.1.1 | 215 | 24384.8 | 6.86 | Type I | |
| SlMADS70 | Solyc06g034317.1.1 | 153 | 16949.3 | 4.41 | Type I | |
| SlMADS71 | Solyc06g048380.1.1 | 176 | 20038.6 | 4.90 | Type I | |
| SlMADS72 | Solyc06g048380.2.1 | 132 | 15027 | 4.82 | Type I | |
| SlMADS73 | Solyc06g033820.1.1 | 196 | 22657.4 | 7.25 | Type I | |
| SlMADS74 | Solyc06g033830.1.1 | 113 | 13058.8 | 8.44 | Type I | |
| SlMADS75 | Solyc07g052700.3.1 | 197 | 22133.2 | 8.44 | Type I | |
| SlMADS76 | Solyc03g115910.2.1 | 434 | 49552.6 | 5.6 | Type I | |
| SlMADS77 | Solyc12g087820.1.1 | 106 | 11969.2 | 11.03 | Type I | |
| SlMADS78 | Solyc05g051830.2.1 | 389 | 44560 | 5.91 | Type I | |
| SlMADS79 | Solyc10g017640.1.1 | 61 | 7032.22 | 11.24 | Type I | |
| SlMADS80 | Solyc04g076680.2.1 | 63 | 70492.3 | 11.03 | Type I | |
| SlMADS81 | Solyc12g088080.1.1 | 97 | 11295.2 | 10.59 | Type I | |
| SlMADS82 | Solyc01g105800.2.1 | 279 | 32104.7 | 9.11 | Type II | |
| SlMADS83 | Solyc01g106170.2.1 | 148 | 17032.2 | 10.98 | Type II | |
| SlMADS84 | Solyc10g080030.1.1 | 229 | 25791.3 | 6.37 | Type II | |
| SlMADS85 | Solyc01g105810.3.1 | 215 | 24518.2 | 9.22 | Type II | |
| SlMADS86 | Solyc04g078300.3.1 | 145 | 16547.2 | 9.9 | Type II | |
| SlMADS87 | Solyc04g078300.2.1 | 334 | 38130.7 | 5.96 | Type II | |
| SlMADS88 | Solyc03g006830.3.1 | 209 | 24310.2 | 9.43 | Type II | |
| SlMADS89 | Solyc10g044967.1.1 | 226 | 26172 | 6.14 | Type II | |
| SlMADS90 | Solyc11g032100.2.1 | 201 | 23104.8 | 6.45 | Type II | |
| SlMADS91 | Solyc05g015720.2.1 | 204 | 23433.5 | 5.36 | Type II | |
| SlMADS92 | Solyc01g093960.3.1 | 242 | 27359.1 | 8.19 | Type II | |
| SlMADS93 | Solyc02g091550.2.1 | 249 | 28342.2 | 9.07 | Type II | |
| SlMADS94 | Solyc02g091550.1.1 | 235 | 27198.1 | 9.65 | Type II | |
| SlMADS95 | Solyc04g076700.3.1 | 226 | 25933.3 | 8.59 | Type II | |
| SlMADS96 | Solyc03g019720.3.1 | 193 | 22631.1 | 9.88 | Type II | |
| SlMADS97 | Solyc12g088090.2.1 | 239 | 27695.8 | 9.84 | Type II | |
| SlMADS98/SlCMB1 | Solyc04g005320.2.1 | 238 | 27522.1 | 8.60 | Type II | [72] |